PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro06_G13235

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

MYB

Protein Properties

Length: 227aa MW: 26380.5 Da PI: 6.2534

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro06_G13235	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	43.3	8.6e-14	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W +eEd +l +vk+ G ++W+t a++ g+ R++ +c++rw++yl Ro06_G13235 14 KGPWLEEEDVRLTMYVKLKGDRRWETLAKESGLMRSGRSCRLRWLNYL 61 79********************************************97 PP
2	Myb_DNA-binding	43.3	8.7e-14	71	112	5	48
-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 T +E+++++++++++G++ W+ Ia++++ gRt++ +k++w+++l Ro06_G13235 71 TVDEEKIILKLHELWGNK-WSNIAQMLP-GRTDNWIKNYWRSHL 112 89**************.*****.**********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 227 aa Download sequence
MAYQAAVEGQ KLRKGPWLEE EDVRLTMYVK LKGDRRWETL AKESGLMRSG RSCRLRWLNY 60 LRPNLKHGHI TVDEEKIILK LHELWGNKWS NIAQMLPGRT DNWIKNYWRS HLVKKAQIQD 120 GAASARNLQC ALNKAQQGFF FQEGDKMPAD KKYNFDQDHD SVENLWGTKE TNSEDLGLSD 180 FALPSSPYET RLSDWISELS SEQSGITWTP DHDNDAWDCS SSLWDMN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G53200.1	3e-59	MYB family protein