PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro06_G13350

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

Protein Properties

Length: 975aa MW: 111520 Da PI: 8.125

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro06_G13350	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	46.3	7.6e-15	810	884	1	80
EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfv 80 f+ ++psd +s l+lp +fa++h ++ ++ ++l+ ++g +W+v+++y+k++ + +++GW Fvk+n+L++gD++ Ro06_G13350 810 FIVSMKPSDIQSS--LSLPSEFATRHlIMQAAS--SIILRVSDGTTWSVEFTYTKQKAQ--FQRGWLTFVKDNNLEVGDSL 884 5556666666665..9********7444444..6***********77777765..9***************85 PP
2	B3	36.1	1.2e-11	883	944	17	79
E--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-E CS B3 17 vlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDf 79 +lp++f +++ +++ ++ + +l+ ++gr+W+vk++y+ + +r l +GW+ Fv++n+Lk+gD Ro06_G13350 883 SLPNEFSKRYlmKLP-AG--MAILRVSDGRTWSVKFKYDLGNSRARLLSGWSPFVRDNNLKVGDL 944 699****974333.33..789999********77777777888*************5 PP

Sequence ? help Back to Top
Protein Sequence Length: 975 aa Download sequence
MSTSLLSRNP DKFMPKLLDH LRRAREVADT DDEALLMSFK NMEDELENIK GVLPRVKHWE 60 QILVNQFTTL ERGLDKIILG TESSVEAITA TLHRMAHNVE QIKGSMPLVE LMPAPERSSE 120 SLWTRRSQPG LGVADQEMSQ EWSELGLEDW VDKTHIMENI RRSYEHLDSV ELKMCCLSLS 180 IFPPDSVIKK RPLIYWWIGE SFVTSTPHKT AEEAGEEIFQ KLITSGLIHV PPQYCFVVTN 240 CTVHPWVRHM LVSLAKHAKL FDFDSRWPRM PSYKDSISRC RRACLVYDNP IPQVSNGWKV 300 EDLLTVFNVN EQYLSLKREW LKKLNKVEVL QLGRWQNSAS HHIEVEDGGF LKGLGTQNKL 360 LKYLSLRGIS RIIKLPSSIL KLLNLEILDL RACHSLETLP PDISSLRNLT HFDISECYLL 420 EAMPKGIDKL SSLQVLKGFV IGDLERTPCR LGDFAQLRHL KRLSIHMGNQ AQVQKGEFNN 480 LKQILSLRHL KLSWGVVSPN LKAKVAFQSL EFSFPPDLEK LDLQGIPLAH VPEWLNPVQL 540 KNLKKLYIRG GELDSLDHGE TDKWTVEIVR LKHLNNLEIG LPKLKEEFPH LRYLEKVNCH 600 EIEKDRYDED IGEQKIPKKF VMKYGKDLSN SACLKLPSGS EWEVGLTRCK DYGNFLLFRY 660 EGNSHFHVCI FDKSATEIDY PIKIPEIEEA DEDDDYHVQP KNLEDFQPNP KTRKKCPLPC 720 PPCKKMRTNL SGKADMVSES DNSQPRDMFE KPITNEDSHC TKLEVKKKDG RVTGGSSGTP 780 RFLKQTSPQV LGNALALRRA YDLKTENPSF IVSMKPSDIQ SSLSLPSEFA TRHLIMQAAS 840 SIILRVSDGT TWSVEFTYTK QKAQFQRGWL TFVKDNNLEV GDSLPNEFSK RYLMKLPAGM 900 AILRVSDGRT WSVKFKYDLG NSRARLLSGW SPFVRDNNLK VGDLSYSPPK SLQISPRQQE 960 FHQTGEANSD ASGQR

Sequence ? help Back to Top

Protein Sequence Length: 975 aa Download sequence

MSTSLLSRNP DKFMPKLLDH LRRAREVADT DDEALLMSFK NMEDELENIK GVLPRVKHWE  60
QILVNQFTTL ERGLDKIILG TESSVEAITA TLHRMAHNVE QIKGSMPLVE LMPAPERSSE  120
SLWTRRSQPG LGVADQEMSQ EWSELGLEDW VDKTHIMENI RRSYEHLDSV ELKMCCLSLS  180
IFPPDSVIKK RPLIYWWIGE SFVTSTPHKT AEEAGEEIFQ KLITSGLIHV PPQYCFVVTN  240
CTVHPWVRHM LVSLAKHAKL FDFDSRWPRM PSYKDSISRC RRACLVYDNP IPQVSNGWKV  300
EDLLTVFNVN EQYLSLKREW LKKLNKVEVL QLGRWQNSAS HHIEVEDGGF LKGLGTQNKL  360
LKYLSLRGIS RIIKLPSSIL KLLNLEILDL RACHSLETLP PDISSLRNLT HFDISECYLL  420
EAMPKGIDKL SSLQVLKGFV IGDLERTPCR LGDFAQLRHL KRLSIHMGNQ AQVQKGEFNN  480
LKQILSLRHL KLSWGVVSPN LKAKVAFQSL EFSFPPDLEK LDLQGIPLAH VPEWLNPVQL  540
KNLKKLYIRG GELDSLDHGE TDKWTVEIVR LKHLNNLEIG LPKLKEEFPH LRYLEKVNCH  600
EIEKDRYDED IGEQKIPKKF VMKYGKDLSN SACLKLPSGS EWEVGLTRCK DYGNFLLFRY  660
EGNSHFHVCI FDKSATEIDY PIKIPEIEEA DEDDDYHVQP KNLEDFQPNP KTRKKCPLPC  720
PPCKKMRTNL SGKADMVSES DNSQPRDMFE KPITNEDSHC TKLEVKKKDG RVTGGSSGTP  780
RFLKQTSPQV LGNALALRRA YDLKTENPSF IVSMKPSDIQ SSLSLPSEFA TRHLIMQAAS  840
SIILRVSDGT TWSVEFTYTK QKAQFQRGWL TFVKDNNLEV GDSLPNEFSK RYLMKLPAGM  900
AILRVSDGRT WSVKFKYDLG NSRARLLSGW SPFVRDNNLK VGDLSYSPPK SLQISPRQQE  960
FHQTGEANSD ASGQR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18990.1	3e-14	B3 family protein