PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro06_G14746
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family WRKY
Protein Properties Length: 207aa    MW: 24063 Da    PI: 6.7684
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro06_G14746genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY78.57.7e-252283159
                 ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY  1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59
                 +dDg++WrKYGqKe+ ++ +prsY+rC+ +   gC+++k+v++ ++dp ++ +tY g+H+++
  Ro06_G14746 22 VDDGHAWRKYGQKEILNASHPRSYFRCSLKydqGCKATKQVQKVEDDPCLFRTTYFGNHTCT 83
                 59**************************998899**************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    
MAAYCTCRKT SNSWTRDTTD FVDDGHAWRK YGQKEILNAS HPRSYFRCSL KYDQGCKATK  60
QVQKVEDDPC LFRTTYFGNH TCTHSFPKAS ELILDSVSSS PREESDSKFM IIFENNNNLT  120
YKQERPFFSS YSSTEREIIK PNHVASIQSS SCDYLGDQLT VFESSDLISG LLKTMEFDHE  180
GMLYYRTIMG YFDQEILPIL SLRMFKR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.13e-27WRKY family protein