PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro06_G15274
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family NF-YB
Protein Properties Length: 161aa    MW: 18397.5 Da    PI: 6.3561
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro06_G15274genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB1597.4e-507102297
        NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 
                  +eqdr+lPianv+rimk++lP++ak+sk+ak+ +qec++ef+sfvt+easdkc++e+rkt+ngdd++wal+ lGf++y+e+ + yl+kyre+e+e+
  Ro06_G15274   7 EEQDRLLPIANVGRIMKQILPQRAKVSKEAKQRMQECATEFLSFVTGEASDKCHKENRKTVNGDDICWALSALGFDNYAEATTRYLHKYREAERER 102
                  69*******************************************************************************************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    
MVDHHEEEQD RLLPIANVGR IMKQILPQRA KVSKEAKQRM QECATEFLSF VTGEASDKCH  60
KENRKTVNGD DICWALSALG FDNYAEATTR YLHKYREAER ERLAANQSNN ININININTT  120
SSSSHLEIRE GDQPNYISGT QPPNLEFRML EKGDNSFSRP S
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09030.12e-55NF-YB family protein