PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro06_G15451
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family B3
Protein Properties Length: 537aa    MW: 60105.6 Da    PI: 7.0021
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro06_G15451genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B334.43.9e-11981583599
                  EEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
           B3  35 tltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                     +ed++g +W+v +  +  +g++ ++ GW+ F  +++L+ g ++vF +++ s f  +vk++++
  Ro06_G15451  98 STFIEDSQGLRWNVAI--SSIDGSFAFRHGWNAFSLDHDLQLGNILVFNYMKGSHF--TVKIYDN 158
                  46789***********..99999***************************998999..9999886 PP
2B340.55e-13434525595
                  -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS..SEE..EEE CS
           B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr..sefelvvk 95 
                   ++++ l ++ l +  +fa++++  + ++  + l+ ++g +W   ++++ k ++ +  +GW +F+ +ngL++gD +v++++++  +e +++v+
  Ro06_G15451 434 IMQPSDLMNA-LKIDITFAKQYMCAPGSDCNVNLQIPNGSTWPTLCSVTEKENARIRYRGWMKFATDNGLQVGDACVLEMIKQlpHEITFLVH 525
                  4566666666.99*********777888889***************9999998888899********************98764444455555 PP
Sequence ? help Back to Top
Protein Sequence    Length: 537 aa     Download sequence    
MGHEFKACAE CTEKCLLVHG NKRNASPVIT SFVRVMFGNQ FSKYMMITIV TSNYVTCSTA  60
PSPLIFLVMK EIITSNHAIS MQELPPNVAC AVSLADQSTF IEDSQGLRWN VAISSIDGSF  120
AFRHGWNAFS LDHDLQLGNI LVFNYMKGSH FTVKIYDNSG CELNFFETNE KKRKRDHRDS  180
IFKGGWCYAV DKSSISKDDL GLCGCSDAEI NKRLYEVNGK GKAPITKQYA SNCEAEYAEE  240
MCDMINREYG DKQGENRAHI LDLYDYEMPK KIKNSGSEGS NKMAVVNVTC CHNADSSLIL  300
RNEASSVKDP VVKEVATRVI PLDGSEFERT LKNNYCEVKV KKEEPSDIHS SIETSGHLFA  360
TLAVIPEENE ETISAISTRA TKKCRTADGS GKSFNLLFHV VLTMELKYGN WTGGDEAISR  420
EKRFKSGHPT LVVIMQPSDL MNALKIDITF AKQYMCAPGS DCNVNLQIPN GSTWPTLCSV  480
TEKENARIRY RGWMKFATDN GLQVGDACVL EMIKQLPHEI TFLVHITRAR PSYLRCM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01580.12e-08B3 family protein