PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro06_G15510
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family C2H2
Protein Properties Length: 148aa    MW: 16371.7 Da    PI: 7.9957
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro06_G15510genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.45.2e-052244123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 +kC +C+ksFs+ + L  H++ H
  Ro06_G15510 22 FKCLHCPKSFSNGHALGGHQNAH 44
                 89*****************9988 PP
Sequence ? help Back to Top
Protein Sequence    Length: 148 aa     Download sequence    
MAPSCKTNSE DSTANSPPKN HFKCLHCPKS FSNGHALGGH QNAHRGLDKG MMKTLKQILA  60
TYRKQFPGNS SSPSVTAQVP SAEVILGHEL TPERLTEPEM ARGGRTIDFL KEWKLIYTDP  120
IVQEKIEENL NLELKLGSSW EGCLLLTN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01860.11e-07C2H2 family protein