PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro06_G16349

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

LBD

Protein Properties

Length: 305aa MW: 34107.1 Da PI: 5.9781

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro06_G16349	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	127.8	4.9e-40	10	109	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 aCaaCk++rr+C kdC lap+fpa+qpk f+n+h+l+G+sn++k+lk++++e++e+am+s++ye+++ra+ Pv G++g+i++l+ ql+q+ +el +++ Ro06_G16349 10 ACAACKYQRRRCIKDCDLAPHFPADQPKMFQNAHRLYGVSNIMKILKQTHPEQKEEAMRSIIYESNMRAKFPVTGCMGIINQLTFQLQQALEELRYVR 107 7*********************************************************************************************9998 PP DUF260 99 ee 100 ++ Ro06_G16349 108 TH 109 76 PP

Sequence ? help Back to Top
Protein Sequence Length: 305 aa Download sequence
MTIKGGTSQA CAACKYQRRR CIKDCDLAPH FPADQPKMFQ NAHRLYGVSN IMKILKQTHP 60 EQKEEAMRSI IYESNMRAKF PVTGCMGIIN QLTFQLQQAL EELRYVRTHL AICRDQCQYQ 120 YNSPSCPSSQ LQLGIQTNDH EALQLYQQQY QYHQYNSAAG SSAGGGGMSL MANEYLANGI 180 NGVYIDENDS VVKPLRVQQF YYGNNNVDAA VAAQHNLMTS QGFPIQQEMD VPHDYDDIPF 240 DTIADDRQSY IESKEACESS AESAFKGTTT QSIEHVSQND LKSAAACFTN RVGHGTTSFA 300 MSTVE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47870.1	5e-43	LBD family protein