PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro06_G16836
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family ERF
Protein Properties Length: 260aa    MW: 27329.1 Da    PI: 10.2311
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro06_G16836genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.89.5e-173584255
          AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                  ++GVr++  +g+WvAeIr+p+    r +r +lg+f +  eAa a++ a++kl+g
  Ro06_G16836 35 TFRGVRQRT-WGKWVAEIREPK----RgARLWLGTFNSSTEAALAYDDAARKLYG 84
                 69****999.**********83....46************************987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    
MDKDPEKKVT QKTIMGRSRK GCMKGKGGPE NSLCTFRGVR QRTWGKWVAE IREPKRGARL  60
WLGTFNSSTE AALAYDDAAR KLYGGSPAKL NLPDHSSSST SSSSKTSSPS KASSPSKASS  120
PAKASSPSKA SSPSKASSPS KASSPSKASS PAKTSSPSKA SSSSKASSSS STMTAGSGSN  180
DHKHEASCNN MFGGWNINGN NRLWESNPVL SADWSGVCGE RDFLEMNNIG VMMGGDSEFV  240
NWDASSLEEP PWSLQSLEGS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18450.11e-41ERF family protein