PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro06_G17303
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family GRAS
Protein Properties Length: 455aa    MW: 50964.2 Da    PI: 6.5694
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro06_G17303genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS458.44.5e-140804492374
         GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                   ++L+ cA+av+++dl +aq+++ +l++++s +g+p+qRl ay++e+L arla+s+s+++kal+++e +   sse l+++++++ev+P++kf+++ aN
  Ro06_G17303  80 NQVLIFCAKAVAENDLLMAQWMMDELRQMVSVSGEPIQRLGAYMLEGLVARLASSGSSICKALRCKEPA---SSELLSYMHILYEVCPYFKFGYMSAN 174
                  689*****************************************************************9...9************************* PP

         GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLr 195
                   aI ea++ e++vHiiDf+i+qG QW++L+qa+a+Rp+gpp++RiTg++++ s   +   l+ +g+rL+k+A  ++vpfef++ +a + +d++le+L 
  Ro06_G17303 175 GAIAEAMKDENQVHIIDFQIGQGSQWLTLIQAFAARPGGPPHIRITGIDDSMSAyaRGGGLNIVGKRLTKLAGLFKVPFEFHA-AAISGSDVQLENLG 271
                  **************************************************888789999************************.8999********** PP

         GRAS 196 vkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgre 293
                  v+pgEala n++++lh+++desvs++++rd++L+lvkslsPkvv++veqe+++n++ F+ rf+e+l+yy+a+f+s++++lpr+++eri+vE+++l+re
  Ro06_G17303 272 VRPGEALAMNFAFMLHHMPDESVSTQNHRDRLLRLVKSLSPKVVTLVEQESNTNTAAFFSRFVETLNYYTAMFESIDVTLPRDHKERINVEQHCLARE 369
                  ************************************************************************************************** PP

         GRAS 294 ivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  +vn++aceg er+erhe l+kWr+r+ +aGF+p+pls+ +++++k+ll++++++ yr++e++++l+lgWk+r Lv+ +aW+
  Ro06_G17303 370 VVNIIACEGVERVERHELLGKWRSRFAMAGFTPYPLSSLVNATIKTLLENYSDK-YRLQERDEALYLGWKNRDLVASCAWK 449
                  ****************************************************55.*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 455 aa     Download sequence    
MSQHHLSPDH TYSSPISGSC ITDDATNFKY RLKELETAML GDSNIFDNYC STLQNGTSNT  60
RLEVDSWGQI MDAISKKDLN QVLIFCAKAV AENDLLMAQW MMDELRQMVS VSGEPIQRLG  120
AYMLEGLVAR LASSGSSICK ALRCKEPASS ELLSYMHILY EVCPYFKFGY MSANGAIAEA  180
MKDENQVHII DFQIGQGSQW LTLIQAFAAR PGGPPHIRIT GIDDSMSAYA RGGGLNIVGK  240
RLTKLAGLFK VPFEFHAAAI SGSDVQLENL GVRPGEALAM NFAFMLHHMP DESVSTQNHR  300
DRLLRLVKSL SPKVVTLVEQ ESNTNTAAFF SRFVETLNYY TAMFESIDVT LPRDHKERIN  360
VEQHCLAREV VNIIACEGVE RVERHELLGK WRSRFAMAGF TPYPLSSLVN ATIKTLLENY  420
SDKYRLQERD EALYLGWKNR DLVASCAWKC KPSTN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.10.0GRAS family protein