PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro06_G17330

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

FAR1

Protein Properties

Length: 692aa MW: 80077.1 Da PI: 6.385

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro06_G17330	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	76.6	4.9e-24	71	162	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 ++Y+++A++ GFs+rk++s++s++ g i++r+fvC+++g+++++kk ++++ r+r++ r+gC+akl ++ke ++w+v+++++ HnHel Ro06_G17330 71 EYYSNFARKNGFSIRKARSTESQNLG-IYRRDFVCYRSGFNQPRKKVNVEHPRERKSVRCGCDAKLYLTKEIvdgISQWYVSQFSNVHNHELL 162 69******************8888.**************************************998766789***********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 692 aa Download sequence
MAMKASNNIW IRRQQCPCGD WKCYIKYEGD DPALVSSLHV KSETTSSSSS SEAVFTPYVG 60 QIFKTDDDAF EYYSNFARKN GFSIRKARST ESQNLGIYRR DFVCYRSGFN QPRKKVNVEH 120 PRERKSVRCG CDAKLYLTKE IVDGISQWYV SQFSNVHNHE LLEDDQVRLL PAYRKIQEAD 180 QERILLLSKA GFPVNRIVKV LELEKGVQPG QLPFIEKDIR NFIRTCKKTV QDNDALLNEK 240 RENDMLELLE ACKAMTERDP GFVYDYTIDE NEKVDNIAWS YGNSVRAYSV FGDVVAFDTT 300 YRSVTYGLLL GVWFGIDNHG KEIFLGCVLL HDESSHSFAW ALQAFMRFMR GRCPQTILTD 360 IDLGLRDAIA REFPNTKHVI CVWHILSKIS SWFSLPLGSQ YETFKAEFEM LSHMESIEDF 420 EHQWNILVAR FGLVSDKHIA LLYSSRESWS LSYIRSYFLA RTLTAEFSLA LEAFLKRILN 480 AQTCLPVFFE QVSIAANFGN QTREGMQYMN VKTGMPIEEH ARNILTPYAF NILQREIVQS 540 VQYATTEMAN GSYLVRHYKK LDRECIVIWL PDDEQIHCTC KEFEHSGILC RHSLRILVVK 600 NYFQLPEKYF LLRWRLESSL DSLDDENTQV SADDCSQSFN TLTATLLTES LVSKERFNYV 660 HRELSSLLEH VRNMPVIVDY VVNMAASNIN DS

Sequence ? help Back to Top

Protein Sequence Length: 692 aa Download sequence

MAMKASNNIW IRRQQCPCGD WKCYIKYEGD DPALVSSLHV KSETTSSSSS SEAVFTPYVG  60
QIFKTDDDAF EYYSNFARKN GFSIRKARST ESQNLGIYRR DFVCYRSGFN QPRKKVNVEH  120
PRERKSVRCG CDAKLYLTKE IVDGISQWYV SQFSNVHNHE LLEDDQVRLL PAYRKIQEAD  180
QERILLLSKA GFPVNRIVKV LELEKGVQPG QLPFIEKDIR NFIRTCKKTV QDNDALLNEK  240
RENDMLELLE ACKAMTERDP GFVYDYTIDE NEKVDNIAWS YGNSVRAYSV FGDVVAFDTT  300
YRSVTYGLLL GVWFGIDNHG KEIFLGCVLL HDESSHSFAW ALQAFMRFMR GRCPQTILTD  360
IDLGLRDAIA REFPNTKHVI CVWHILSKIS SWFSLPLGSQ YETFKAEFEM LSHMESIEDF  420
EHQWNILVAR FGLVSDKHIA LLYSSRESWS LSYIRSYFLA RTLTAEFSLA LEAFLKRILN  480
AQTCLPVFFE QVSIAANFGN QTREGMQYMN VKTGMPIEEH ARNILTPYAF NILQREIVQS  540
VQYATTEMAN GSYLVRHYKK LDRECIVIWL PDDEQIHCTC KEFEHSGILC RHSLRILVVK  600
NYFQLPEKYF LLRWRLESSL DSLDDENTQV SADDCSQSFN TLTATLLTES LVSKERFNYV  660
HRELSSLLEH VRNMPVIVDY VVNMAASNIN DS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28530.1	0.0	FAR1 family protein