PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro06_G17339
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family NF-YB
Protein Properties Length: 248aa    MW: 25543.2 Da    PI: 5.8897
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro06_G17339genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB186.52e-5859154297
        NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 
                  reqdrflPianvsrimkk+lPanakiskdaketvqecvsefisfvt+easdkcqrekrktingddllwa++tlGfe+yveplk+yl+kyre+egek
  Ro06_G17339  59 REQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKIYLQKYREMEGEK 154
                  89********************************************************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    
MHYYPVDPTD PNKSLPAVSD SPLSIFNAAQ ETPEIPMADS DNDSGGHNSH SQGGELSARE  60
QDRFLPIANV SRIMKKALPA NAKISKDAKE TVQECVSEFI SFVTGEASDK CQREKRKTIN  120
GDDLLWAMTT LGFEEYVEPL KIYLQKYREM EGEKGAIGTG GGRDKDGGSG GGGSAAGGGG  180
GTGSGLSSGT SGGAGGGFNG VYGGMGMMGH HQGHVYGSGG YQHQMGMGVG VDKSSGSGGG  240
ASVRSRVL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14540.19e-73NF-YB family protein