PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro06_G17370

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

TCP

Protein Properties

Length: 371aa MW: 41766.1 Da PI: 8.7676

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro06_G17370	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	63.8	6.4e-20	29	84	3	58
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpa 58 + ++r s++h+kv+gR RR+R++++c +F L++eLG+ +d++ti WLl + p Ro06_G17370 29 VTRRRCSDRHSKVDGRHRRIRIPMTCCPGIFRLTEELGHRSDGQTIHWLLSKVRPD 84 6789***********************************************98875 PP

Sequence ? help Back to Top
Protein Sequence Length: 371 aa Download sequence
MEEANTAIIT TDPEENPPNL HAQPRQQQVT RRRCSDRHSK VDGRHRRIRI PMTCCPGIFR 60 LTEELGHRSD GQTIHWLLSK VRPDLVLPPK PKTRPVPDDP VPRPICMAPG LQEKTVARLR 120 RPTIRATVVQ ASTVLFDTPA TLGFKHLVED FAKWGQGFGS NKAERLVAGA AAYGSQLAVF 180 PEAFVGGYPR GVMFDAATGT HSPEENQAFQ KYYASAINVP GPEADRLAKI ASQYKVHLVM 240 GVVERVGFYL CSTVLFFDSF GRYLGKHPKL LPLASEYPVW HFGEKLLPSV YETTVGRIGI 300 ELYCAPTAEA REIWCSSMVH IALEGGCFIL SANQFCRRND YPLPLDCVPR DSNMRWWKCY 360 CFPIWNHFGR T

Sequence ? help Back to Top

Protein Sequence Length: 371 aa Download sequence

MEEANTAIIT TDPEENPPNL HAQPRQQQVT RRRCSDRHSK VDGRHRRIRI PMTCCPGIFR  60
LTEELGHRSD GQTIHWLLSK VRPDLVLPPK PKTRPVPDDP VPRPICMAPG LQEKTVARLR  120
RPTIRATVVQ ASTVLFDTPA TLGFKHLVED FAKWGQGFGS NKAERLVAGA AAYGSQLAVF  180
PEAFVGGYPR GVMFDAATGT HSPEENQAFQ KYYASAINVP GPEADRLAKI ASQYKVHLVM  240
GVVERVGFYL CSTVLFFDSF GRYLGKHPKL LPLASEYPVW HFGEKLLPSV YETTVGRIGI  300
ELYCAPTAEA REIWCSSMVH IALEGGCFIL SANQFCRRND YPLPLDCVPR DSNMRWWKCY  360
CFPIWNHFGR T

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23280.1	1e-17	TCP family protein