PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro06_G17377

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

Protein Properties

Length: 345aa MW: 38335.6 Da PI: 6.6491

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro06_G17377	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	104.6	5.2e-33	84	189	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 f+k ltpsdv+k++rlv+pk++ae++ ++ e++ l++edesg+ W+++++y+++s++yvltkGW+++vk+++L++gD+v+F++ ++++++ Ro06_G17377 84 FEKPLTPSDVGKLNRLVIPKQHAEKYfplgggdSSGAEKGLLLSFEDESGKCWRFRYSYWNSSQSYVLTKGWSRYVKEKRLDAGDVVLFERRRNDSER 181 99**************************998444568889********************************************99889999 PP .EEEEE-S CS B3 92 lvvkvfrk 99 l+++++r+ Ro06_G17377 182 LFIGWRRR 189 ****97 PP

Sequence ? help Back to Top
Protein Sequence Length: 345 aa Download sequence
MSLNHFSSSD LQETQWWNNA TSQQQPSMDA TPCNFHPQLY QNYQPTWLGP QQPPTLNFNL 60 NLNQQHNDSA DGELQQIDDK ETMFEKPLTP SDVGKLNRLV IPKQHAEKYF PLGGGDSSGA 120 EKGLLLSFED ESGKCWRFRY SYWNSSQSYV LTKGWSRYVK EKRLDAGDVV LFERRRNDSE 180 RLFIGWRRRA VQDSSAAGGN NSGAQVSGSG GGGGGGVESS SSGGWTRMFY SAPQSYPAHH 240 HHSVPYPPDY LQHATAAAAG SPVQNQTASS SGGSSRILRL FGVNLECQQQ QDDESEPSTP 300 DGSSLSSQGP THHQFYPNPT NAYYGDHRDF TFSRDANPSM RNRRG

Sequence ? help Back to Top

Protein Sequence Length: 345 aa Download sequence

MSLNHFSSSD LQETQWWNNA TSQQQPSMDA TPCNFHPQLY QNYQPTWLGP QQPPTLNFNL  60
NLNQQHNDSA DGELQQIDDK ETMFEKPLTP SDVGKLNRLV IPKQHAEKYF PLGGGDSSGA  120
EKGLLLSFED ESGKCWRFRY SYWNSSQSYV LTKGWSRYVK EKRLDAGDVV LFERRRNDSE  180
RLFIGWRRRA VQDSSAAGGN NSGAQVSGSG GGGGGGVESS SSGGWTRMFY SAPQSYPAHH  240
HHSVPYPPDY LQHATAAAAG SPVQNQTASS SGGSSRILRL FGVNLECQQQ QDDESEPSTP  300
DGSSLSSQGP THHQFYPNPT NAYYGDHRDF TFSRDANPSM RNRRG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G36080.1	1e-67	B3 family protein