PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro06_G18307
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family NAC
Protein Properties Length: 191aa    MW: 22141.4 Da    PI: 7.5702
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro06_G18307genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM94.41.8e-2981263128
          NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 
                  pGfrFhP+d+e++ +yL++k+ g+++++ +vi+++d+y+  P++Lp  +v + e++ewyf+++r +++         tk+gy  a+  d+++++ +++
  Ro06_G18307   8 PGFRFHPSDDEIIGFYLTNKILGRPIPF-DVINTIDVYSNSPNQLPlGNVGHfEDNEWYFYTTRPNSS------LFLTKDGYFAAS-MDEQIFH-NNQ 96 
                  9***************************.9****************6444434899*******98854......457999*99876.6789999.899 PP

          NAM  99 lvglkktLvfykgrapkgektdWvmheyrl 128
                  +vg k++++fy gr p+g kt+Wv+ e+r+
  Ro06_G18307  97 VVGFKQIMTFYLGRPPTGMKTNWVVLEFRV 126
                  ****************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    
MPSPCPLPGF RFHPSDDEII GFYLTNKILG RPIPFDVINT IDVYSNSPNQ LPLGNVGHFE  60
DNEWYFYTTR PNSSLFLTKD GYFAASMDEQ IFHNNQVVGF KQIMTFYLGR PPTGMKTNWV  120
VLEFRVNPLI FPAGKLDNVV QEKLSSFVMC KILHTQENLI KLPEKRVRDE RDSSRIVMEE  180
LQSKRPNLQI R
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10490.16e-32NAC family protein