PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro06_G18834

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

C2H2

Protein Properties

Length: 468aa MW: 50912.1 Da PI: 9.574

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro06_G18834	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.3	2.8e-05	64	86	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++C+k F r nL+ H r H Ro06_G18834 64 FICEICNKGFQRDQNLQLHRRGH 86 89*******************88 PP
2	zf-C2H2	12.9	0.00034	141	163	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H +t+ Ro06_G18834 141 WKCEKCSKKYAVQSDWKAHSKTC 163 58*****************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 468 aa Download sequence
MMSGDAYSLI PSTIEGFDHQ LNAANPSQKS NPVVKKKRNL PGTPDPDAEV IALSPTTLMA 60 TNRFICEICN KGFQRDQNLQ LHRRGHNLPW KLRQRTNKDV IKKKVYICPE KTCVHHDPSR 120 ALGDLTGIKK HFSRKHGEKK WKCEKCSKKY AVQSDWKAHS KTCGTREYKC DCGTLFSRKD 180 SFITHRAFCD ALTEESARLT SAAASATNLN FGDDHTLNNT MINSQPVQDV SQISDFEKPS 240 RLSFWLNQQP NSLNVMDMAA ANPNNLYEMV QMGSATNLFG STSMANFGAS TSTSSANHSL 300 SSPIGLKDQE GGNLKANIIS KPPAAPMSAT ALLQKAAQLG STRSTNQSFS GSSLGVMSSP 360 SSSNALSFNS RSNELNQLFQ SSTSSSDMIS SLSCSSNSTS LEQLMKFGGA NSKGIDHQNS 420 LTRDFLGVGG AGDHHRQSHN RPFLPQELAK FGSMSSAAMG LSPFTSNH

Sequence ? help Back to Top

Protein Sequence Length: 468 aa Download sequence

MMSGDAYSLI PSTIEGFDHQ LNAANPSQKS NPVVKKKRNL PGTPDPDAEV IALSPTTLMA  60
TNRFICEICN KGFQRDQNLQ LHRRGHNLPW KLRQRTNKDV IKKKVYICPE KTCVHHDPSR  120
ALGDLTGIKK HFSRKHGEKK WKCEKCSKKY AVQSDWKAHS KTCGTREYKC DCGTLFSRKD  180
SFITHRAFCD ALTEESARLT SAAASATNLN FGDDHTLNNT MINSQPVQDV SQISDFEKPS  240
RLSFWLNQQP NSLNVMDMAA ANPNNLYEMV QMGSATNLFG STSMANFGAS TSTSSANHSL  300
SSPIGLKDQE GGNLKANIIS KPPAAPMSAT ALLQKAAQLG STRSTNQSFS GSSLGVMSSP  360
SSSNALSFNS RSNELNQLFQ SSTSSSDMIS SLSCSSNSTS LEQLMKFGGA NSKGIDHQNS  420
LTRDFLGVGG AGDHHRQSHN RPFLPQELAK FGSMSSAAMG LSPFTSNH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	4e-99	C2H2 family protein