PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro06_G18952

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

MYB

Protein Properties

Length: 381aa MW: 42221.3 Da PI: 6.7549

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro06_G18952	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	56.6	6.1e-18	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W++eEde+l+++++ +G g+W+++++ g+ R++k+c++rw +yl Ro06_G18952 14 RGLWSPEEDEKLINYITNYGHGCWSSVPKLAGLQRCGKSCRLRWINYL 61 788*******************************************97 PP
2	Myb_DNA-binding	45.9	1.3e-14	67	109	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 rg+++ +E l+++++ lG++ W+ Ia++++ gRt++++k++w+ Ro06_G18952 67 RGSFSSQEASLIIHLHSILGNR-WAQIAKHLP-GRTDNEVKNFWN 109 899*****************.*****.*********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 381 aa Download sequence
MGHHSCCNKQ KVKRGLWSPE EDEKLINYIT NYGHGCWSSV PKLAGLQRCG KSCRLRWINY 60 LRPDLKRGSF SSQEASLIIH LHSILGNRWA QIAKHLPGRT DNEVKNFWNS SIKKKLLPHE 120 VIPALASFSN IHNPGSTGSD QESFFTTLIT NPHLCLYQQE QPYLHSLPIP LPLPSFYHGD 180 HNTLKLDHTN YSSNFFHFPS PVQLPSNYSS SYDSSWSLGY QPHQFDPNHQ HNQILNNIEV 240 APNFNIGNEL MVPSMASLPG YDHENLSVVP AMPQFCDNID GTSCISMPVG LSDDHPPQEL 300 DSLANLSSCF GPFGARGSYN PCDVQLLSNQ LEFVDAIISS LPISSSSLSQ SSASSSLSPL 360 PNSQLFITNP NVHSSLGSLA S

Sequence ? help Back to Top

Protein Sequence Length: 381 aa Download sequence

MGHHSCCNKQ KVKRGLWSPE EDEKLINYIT NYGHGCWSSV PKLAGLQRCG KSCRLRWINY  60
LRPDLKRGSF SSQEASLIIH LHSILGNRWA QIAKHLPGRT DNEVKNFWNS SIKKKLLPHE  120
VIPALASFSN IHNPGSTGSD QESFFTTLIT NPHLCLYQQE QPYLHSLPIP LPLPSFYHGD  180
HNTLKLDHTN YSSNFFHFPS PVQLPSNYSS SYDSSWSLGY QPHQFDPNHQ HNQILNNIEV  240
APNFNIGNEL MVPSMASLPG YDHENLSVVP AMPQFCDNID GTSCISMPVG LSDDHPPQEL  300
DSLANLSSCF GPFGARGSYN PCDVQLLSNQ LEFVDAIISS LPISSSSLSQ SSASSSLSPL  360
PNSQLFITNP NVHSSLGSLA S

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13890.2	7e-79	MYB family protein