PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro06_G18966
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family MYB_related
Protein Properties Length: 285aa    MW: 31789.4 Da    PI: 10.3415
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro06_G18966genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding37.26.6e-123990147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                     +++WT eE++ l+ +v+++G g Wk I +        + R+  ++k++w+++
      Ro06_G18966 39 KQKWTSEEEDALLAGVAKHGAGKWKNILKDQEfapslTLRSNIDLKDKWRNL 90
                     79***************************999999**99***********96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    
MSSSTFRKLK RISEREREGE RKPGGRGSAK KKGRMGNQKQ KWTSEEEDAL LAGVAKHGAG  60
KWKNILKDQE FAPSLTLRSN IDLKDKWRNL SSSITSAQVT QEKMKNPMIK KSVRYAAPSL  120
SLPSRTPPDA TVMDDSKTQE RYNSLIFEAL LTMKDPKGSD VGAIHNFIQQ RIEEPIPHNF  180
KRLLAGRLRS LVSLGKLEKT ENGFKIKNVP LLEIKTPSGL ATSSETEDDA VHITAYTVAD  240
AENKSFLAAE AVKEAERVSK IAEETECMLL LVHTVKLSAW LRSSI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72740.28e-53MYB_related family protein