PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro06_G18981
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family NF-YA
Protein Properties Length: 342aa    MW: 37482.8 Da    PI: 9.2916
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro06_G18981genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA101.67.8e-32182238158
    CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                  dep+YVNaKQy++Il+RRq Rakle+++kl +k rkpylheSRh hAl+R+RgsgGrF
  Ro06_G18981 182 DEPIYVNAKQYRAILRRRQFRAKLEAQNKL-IKVRKPYLHESRHVHALKRARGSGGRF 238
                  79****************************.**************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    
MQSLYSKNSG ISSGHSTSSF IVGSSSWENS AETHTQQSSI SKSVILKMGV LLPHCHNTEK  60
FGMHLHDQDS SSTQSTGQSH SEVATLKEGN PCGKGVASGY NEIQGRPVGV HKKSLSSMAS  120
QEFVFPSQLD FSHSMAHVPF HCAEPYFGGL LAAYGSQAMF HHPQMMGFAP GRVPLPLDLT  180
EDEPIYVNAK QYRAILRRRQ FRAKLEAQNK LIKVRKPYLH ESRHVHALKR ARGSGGRFLN  240
MKKLQDSKTN TTSHRVDVSG SAQLHLTGNM SESDVHETDN YTDGASTTSC SDVTSTSNSD  300
DSFLQKNFRF SGYPSHIGGT LHGPLVDVVR GGGNQHHISI FR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72830.12e-58NF-YA family protein