PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro06_G19547

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

MYB

Protein Properties

Length: 228aa MW: 26047.2 Da PI: 9.5688

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro06_G19547	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	63.7	3.7e-20	30	77	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+++++ +G + Wk+Ia + g++R++k+c++rw++yl Ro06_G19547 30 KGAWTAEEDQKLAEVIAIHGAKKWKSIATKAGLNRCGKSCRLRWLNYL 77 79********************************************97 PP
2	Myb_DNA-binding	50.5	4.9e-16	83	128	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ + +E++l+++++k+lG++ W++Ia +++ gRt++++k++w+++l Ro06_G19547 83 RGNISDQEEDLILRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNSHL 128 78999***************.*****.**********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 228 aa Download sequence
MAPKKQESVK RAVMKPLEAV MKNSKREVNK GAWTAEEDQK LAEVIAIHGA KKWKSIATKA 60 GLNRCGKSCR LRWLNYLRPN IKRGNISDQE EDLILRLHKL LGNRWSLIAG RLPGRTDNEI 120 KNYWNSHLSK RINQKEKQRS TGGADDSTRR ISLVDQKPST QLSDQNKVHG EMKQDSSSEE 180 GTATITNASN KEGDDHEDYS NSDIDIDDFF DFSNEGPFNL EWVNKFLY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27920.1	3e-54	MYB family protein