PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro06_G19549
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family MYB_related
Protein Properties Length: 244aa    MW: 27335.6 Da    PI: 4.7951
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro06_G19549genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.64.4e-161461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT+ Ed +l +++k +G g W+  +++ g++R++k+c++rw++yl
      Ro06_G19549 14 RGAWTAMEDRILTEYIKTHGEGKWRNLPKRAGLKRCGKSCRLRWLNYL 61
                     89********************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    
MGRSPCCAKE GLNRGAWTAM EDRILTEYIK THGEGKWRNL PKRAGLKRCG KSCRLRWLNY  60
LRPDIKRGNI TRDEEELIIR LHKLLGNRCT KVFIPQHSQI DEESCNPPGQ QVSVPSVNHD  120
YGLVNNDDSA MTMVGTGTDH QPADLSTFLN LDIEDENSNS CEFMVDFKMD ESFLSEFLNV  180
DFSQLYSSTS TANGGDSSAH AISTTCGDDD HHKLHGLDFQ PSMAPIVDSE LDWLIADVPM  240
DSLL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49330.13e-45MYB family protein