PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro06_G20901

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

C2H2

Protein Properties

Length: 376aa MW: 43024.8 Da PI: 6.9863

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro06_G20901	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.4	2.5e-05	218	237	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp C k+F+r n++ H+ Ro06_G20901 218 FSCPVCYKTFNRYNNMQMHM 237 89*****************9 PP
2	zf-C2H2	14.4	0.00011	302	324	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +Cgk F + + ++H +++ Ro06_G20901 302 FMCRKCGKAFAVRGDWRTHEKNC 324 89*****************9987 PP

Sequence ? help Back to Top
Protein Sequence Length: 376 aa Download sequence
MAEYPYSSNF FTGLFKFNPL LRHHHHEHPL ISNPPPPQPQ PQPPYAHNFF NINHNHNHNH 60 NQLYSSFYST ETTHLQPPSP PLREALPLLN CLSPTKHYED QEQEHHLHHE YYSCSTDQMD 120 VDDKISKPYN KEDHEEEDEG SVTVALHIGL PSPSAAEMAS VLSAASSSSE MSTTHDKDHA 180 IADHGDDSTG YPMNRSSLNK GQYWIPTPSQ ILIGPTQFSC PVCYKTFNRY NNMQMHMWGH 240 GSQYRKGPES LRGTQPTGML RLPCYCCTPG CRNNIDHPRA KPLKDFRTLQ THYKRKHGIK 300 PFMCRKCGKA FAVRGDWRTH EKNCGKLWYC ICGSDFKHKR SLKDHIKAFG NGHAAYGIDG 360 FEEEDEPASE VEQDND

Sequence ? help Back to Top

Protein Sequence Length: 376 aa Download sequence

MAEYPYSSNF FTGLFKFNPL LRHHHHEHPL ISNPPPPQPQ PQPPYAHNFF NINHNHNHNH  60
NQLYSSFYST ETTHLQPPSP PLREALPLLN CLSPTKHYED QEQEHHLHHE YYSCSTDQMD  120
VDDKISKPYN KEDHEEEDEG SVTVALHIGL PSPSAAEMAS VLSAASSSSE MSTTHDKDHA  180
IADHGDDSTG YPMNRSSLNK GQYWIPTPSQ ILIGPTQFSC PVCYKTFNRY NNMQMHMWGH  240
GSQYRKGPES LRGTQPTGML RLPCYCCTPG CRNNIDHPRA KPLKDFRTLQ THYKRKHGIK  300
PFMCRKCGKA FAVRGDWRTH EKNCGKLWYC ICGSDFKHKR SLKDHIKAFG NGHAAYGIDG  360
FEEEDEPASE VEQDND

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57670.1	1e-138	C2H2 family protein