PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro06_G20929

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

FAR1

Protein Properties

Length: 838aa MW: 97145.6 Da PI: 6.3931

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro06_G20929	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	69.3	9e-22	134	217	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 ++Yn YAke+GF +r+++s ++++++e + ++C++eg+++ ++ + ++++etrtgC a++++++ ++++w+v++++leHnH + Ro06_G20929 134 NYYNCYAKELGFAIRVKSSWTKRNSKEKRGAVLCCNCEGFKTIKEAN-----SRKKETRTGCLAMIRLRLVESNRWRVDEVKLEHNHLF 217 69**************************************99888.....88999****************************77 PP
2	FAR1	69.8	6.5e-22	511	594	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 ++Yn YAkevGF+vr+++s +++++e + + ++Cs +g+++ ++ + r r+etrtgC a+l++++ ++++w+v ++ leHnH l Ro06_G20929 511 NYYNCYAKEVGFRVRVKNSWFKRNSKEKYGAVLCCSSQGFKRIKDVN-----RLRKETRTGCPAMLRMRLVDSKRWRVLEVTLEHNHLL 594 69***************************************9988.....99*******************************87 PP

Sequence ? help Back to Top
Protein Sequence Length: 838 aa Download sequence
MTGDSTFSPS NQALSLNSDL HITIEEGSQN SEQLLEDENN DLGNDCEQLF EIEGNEPESE 60 RDDTSDQFFE IDSNDNENDR GDLNEQLFEI QGNDHEMSRN DDTVIDGQNG GSQEKVYPQP 120 LVGLEFDSYD DAYNYYNCYA KELGFAIRVK SSWTKRNSKE KRGAVLCCNC EGFKTIKEAN 180 SRKKETRTGC LAMIRLRLVE SNRWRVDEVK LEHNHLFDPE RAQNSKSHKR MDSGAKRKME 240 PTLDVEVRTI KLYRTPGADT VESRDLNPIL RTRCCYELQL SKFYTKDVFR KFQHEVAMMS 300 SCFSITQVHT NGPVVTYMIK EREGEEILRG VRNFEVMYDK AGAEVRCMCS CFNLNGYLCR 360 HALCILNYNG VEEIPFQYIL PRWRKDFKRL YVPDFGCNNV DITNPVQWFD HLYRRAMQVV 420 QEGMISQDHY MVSWQAFKES LNKVRLVADK HMEVASVNSQ PVQDPDCIEI ATDGDGVLAE 480 LDVENRVLEG KKEFVAPAIG MEFESYEDAY NYYNCYAKEV GFRVRVKNSW FKRNSKEKYG 540 AVLCCSSQGF KRIKDVNRLR KETRTGCPAM LRMRLVDSKR WRVLEVTLEH NHLLGTKIYK 600 SMKKMGSGTK RKSQSSSDAE KRTIKLYRAL VIDSGGNGPS NSNATEVRND NPNQLNLKKV 660 YTRDIFKKFQ FEVEEMYSCF STTQLHIDGP IIIFLVKERV VADGNRREIR DYEVLYNRAA 720 GEVRCICSCF NFHGYLCRHA LCVLNFNGVE EIPSKYILSR WKKDYKRLYI PDLGSSNVDV 780 SDRVQWFNQL YKSALQIVEE GAISLDHYNV ALQAFEESLK RVHEIEDKHK PENFESMQ

Sequence ? help Back to Top

Protein Sequence Length: 838 aa Download sequence

MTGDSTFSPS NQALSLNSDL HITIEEGSQN SEQLLEDENN DLGNDCEQLF EIEGNEPESE  60
RDDTSDQFFE IDSNDNENDR GDLNEQLFEI QGNDHEMSRN DDTVIDGQNG GSQEKVYPQP  120
LVGLEFDSYD DAYNYYNCYA KELGFAIRVK SSWTKRNSKE KRGAVLCCNC EGFKTIKEAN  180
SRKKETRTGC LAMIRLRLVE SNRWRVDEVK LEHNHLFDPE RAQNSKSHKR MDSGAKRKME  240
PTLDVEVRTI KLYRTPGADT VESRDLNPIL RTRCCYELQL SKFYTKDVFR KFQHEVAMMS  300
SCFSITQVHT NGPVVTYMIK EREGEEILRG VRNFEVMYDK AGAEVRCMCS CFNLNGYLCR  360
HALCILNYNG VEEIPFQYIL PRWRKDFKRL YVPDFGCNNV DITNPVQWFD HLYRRAMQVV  420
QEGMISQDHY MVSWQAFKES LNKVRLVADK HMEVASVNSQ PVQDPDCIEI ATDGDGVLAE  480
LDVENRVLEG KKEFVAPAIG MEFESYEDAY NYYNCYAKEV GFRVRVKNSW FKRNSKEKYG  540
AVLCCSSQGF KRIKDVNRLR KETRTGCPAM LRMRLVDSKR WRVLEVTLEH NHLLGTKIYK  600
SMKKMGSGTK RKSQSSSDAE KRTIKLYRAL VIDSGGNGPS NSNATEVRND NPNQLNLKKV  660
YTRDIFKKFQ FEVEEMYSCF STTQLHIDGP IIIFLVKERV VADGNRREIR DYEVLYNRAA  720
GEVRCICSCF NFHGYLCRHA LCVLNFNGVE EIPSKYILSR WKKDYKRLYI PDLGSSNVDV  780
SDRVQWFNQL YKSALQIVEE GAISLDHYNV ALQAFEESLK RVHEIEDKHK PENFESMQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52520.1	7e-86	FAR1 family protein