PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro06_G20955

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

bHLH

Protein Properties

Length: 619aa MW: 67963.5 Da PI: 7.0813

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro06_G20955	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	51.3	2.1e-16	347	393	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+el+P++ K +Ka++L +A+eY+ksLq Ro06_G20955 347 VHNLSERRRRDRINEKMRALQELIPHS-----NKTDKASMLDEAIEYLKSLQ 393 6***********************7.....5****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 619 aa Download sequence
MNSCIPDWNF EGDLPLTNQK KPLGPDHELV ELLWRNGQVV LHSQTHRKPG LNPNESRQVQ 60 KQHDQQTTRV GGFYGNSGNL IHDEVSMIHY PLEDSFDKEF CSNFFSELPS CDPLEIEKPI 120 KQFGEEKFDA SNATHLVSPS PQTNGKSSTV VEYPQNPMPP PRFQISNPSE KNQNLGGGLG 180 KAVNFSQFSA LGKGDMGSSR RQIGGKESGN LNQGEVRECS VMTVGSSYSG SNQVPNDFDV 240 SRASSINDGT TGFSTEPLYN NVQKMMPLSE GGMTETLDPT LTSSSGGSGS SFGRGGKQSN 300 VVNSNKRKGR DAEDSECQSK AAELESAAGD KPAQRSGSSR RTRAAEVHNL SERRRRDRIN 360 EKMRALQELI PHSNKTDKAS MLDEAIEYLK SLQLQLQVMW MGGGMAPMMF PGVQHYMSRM 420 GMGMGMGPPA LPSMHNPMQL PRVPLVDQCM TAPPTNPAVM CQTPVLNPVD YHNQMQNPSF 480 QEQYARLMGF HHMQTMSQPM NMFRFGSQPL QQSQMIAPTR INTGPLSGGA AANDASIGKM 540 RLYGDLGCIS EFISSLIFIA MSIGSEWLIN KFAFLSLWSP DLFNKTTSTG KMPVMNSSCS 600 HGSQGSPINR IYVPTGDHF

Sequence ? help Back to Top

Protein Sequence Length: 619 aa Download sequence

MNSCIPDWNF EGDLPLTNQK KPLGPDHELV ELLWRNGQVV LHSQTHRKPG LNPNESRQVQ  60
KQHDQQTTRV GGFYGNSGNL IHDEVSMIHY PLEDSFDKEF CSNFFSELPS CDPLEIEKPI  120
KQFGEEKFDA SNATHLVSPS PQTNGKSSTV VEYPQNPMPP PRFQISNPSE KNQNLGGGLG  180
KAVNFSQFSA LGKGDMGSSR RQIGGKESGN LNQGEVRECS VMTVGSSYSG SNQVPNDFDV  240
SRASSINDGT TGFSTEPLYN NVQKMMPLSE GGMTETLDPT LTSSSGGSGS SFGRGGKQSN  300
VVNSNKRKGR DAEDSECQSK AAELESAAGD KPAQRSGSSR RTRAAEVHNL SERRRRDRIN  360
EKMRALQELI PHSNKTDKAS MLDEAIEYLK SLQLQLQVMW MGGGMAPMMF PGVQHYMSRM  420
GMGMGMGPPA LPSMHNPMQL PRVPLVDQCM TAPPTNPAVM CQTPVLNPVD YHNQMQNPSF  480
QEQYARLMGF HHMQTMSQPM NMFRFGSQPL QQSQMIAPTR INTGPLSGGA AANDASIGKM  540
RLYGDLGCIS EFISSLIFIA MSIGSEWLIN KFAFLSLWSP DLFNKTTSTG KMPVMNSSCS  600
HGSQGSPINR IYVPTGDHF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	352	357	ERRRRD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43010.2	4e-42	bHLH family protein