PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro06_G20966

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

ARF

Protein Properties

Length: 1064aa MW: 117271 Da PI: 8.2642

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro06_G20966	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	74.5	1.2e-23	299	400	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 f+k+lt sd++++g +++p++ ae+ ++++++ +l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F ++++ + Ro06_G20966 299 FCKTLTASDTSTHGGFSVPRRAAEKVfppldytQQPPAQ--ELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WNEKNQ 392 99***************************96555555..8********************************************..889999 PP .EEEEE-S CS B3 92 lvvkvfrk 99 l+++++r+ Ro06_G20966 393 LLLGIRRA 400 9**997 PP
2	Auxin_resp	118.8	4.4e-39	425	508	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+t+s F+++YnPras+seFv++++k++ka++ ++vsvGmRf+m fete+ss rr++Gt++g+sdld+vrWpnS+Wrs+k Ro06_G20966 425 AAHAAATNSRFTIFYNPRASPSEFVISLAKYVKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDSVRWPNSHWRSVK 508 79*******************************9789****************************************985 PP

Sequence ? help Back to Top
Protein Sequence Length: 1064 aa Download sequence
MAKIAKRAKN RGQNRESSHP YEHCITPPAI ITTVLIDRRP NKPSTKTNKA SYPNSLFLSF 60 TSRARKLSTS AIKLSSFAVG SSGNVTFSSV SSPPFLYFEL TFRVTVQFLR SGSLGFLSSL 120 QLLGKISELG GVGVEFRVGV KLNVVAFGGV KKIWGVVKGV CFLAFIRMRL SSSSSSSGFN 180 HQPQEGEKKC LNSELWHACA GPLVSLPALG SRVVYFPQGH SEQVAASTNK EVDAHIPNYP 240 NLPPQLICQL HNVTMHADVE TDEVYAQMTL QPLSPQEQKD VYLMPAELGT PSKQPTNYFC 300 KTLTASDTST HGGFSVPRRA AEKVFPPLDY TQQPPAQELI ARDLHDNEWK FRHIFRGQPK 360 RHLLTTGWSV FVSAKRLVAG DSVLFIWNEK NQLLLGIRRA NRPQTVMPSS VLSSDSMHIG 420 LLAAAAHAAA TNSRFTIFYN PRASPSEFVI SLAKYVKAVY HTRVSVGMRF RMLFETEESS 480 VRRYMGTITG ISDLDSVRWP NSHWRSVKVG WDESTAGERQ PRVSLWEIEP LTTFPMYPSP 540 FPLRLKRPWP SGIPSFHALK DGDMGINSPL MWLQGGVGDP GMQSLNFQGF GVSPWMQPRL 600 DASMAGLQPD VYQAMAAAAL QEMRAVDAKC SSQSLLPFQQ SSNVSNAALL QRQSLPQSQS 660 QNTFLQSFQE HQIPASQLLQ QQLRYHPYNN DQRQLQQQQQ QQLQQSQNMH QFSVQQQIPN 720 VMSSLSNFAT QSQSASLQAI PSQTQQQSYS DPVGNAISSS DVPPIHSILG SLSQDGASQL 780 LNLSGSNSVI SSTLLPKVEP QLPSGAAHCV LPQVDQLGTQ QSNISDLTAL PPFPGREYSF 840 HGATDPQSNL LFGVNIDASS LMLQNGIHNL RNIGSGTDSL SIPFGTSNYT SGTGNDYPLN 900 SDMTTSSCVD ESGFLQSSEN VDQVNPPTRT FVKVHKSGSF GRSLDISKFS SYDELRSELG 960 SMFGLEGQLE DPQRSGWQLV FVDRENDVLL LGDDPWQEFV NNVWYIKILS PHEVQQMGKE 1020 GHNRVASVPS QKISNGSNTC DDYVSRQDLR NSSNGIASLG SLDY

Sequence ? help Back to Top

Protein Sequence Length: 1064 aa Download sequence

MAKIAKRAKN RGQNRESSHP YEHCITPPAI ITTVLIDRRP NKPSTKTNKA SYPNSLFLSF  60
TSRARKLSTS AIKLSSFAVG SSGNVTFSSV SSPPFLYFEL TFRVTVQFLR SGSLGFLSSL  120
QLLGKISELG GVGVEFRVGV KLNVVAFGGV KKIWGVVKGV CFLAFIRMRL SSSSSSSGFN  180
HQPQEGEKKC LNSELWHACA GPLVSLPALG SRVVYFPQGH SEQVAASTNK EVDAHIPNYP  240
NLPPQLICQL HNVTMHADVE TDEVYAQMTL QPLSPQEQKD VYLMPAELGT PSKQPTNYFC  300
KTLTASDTST HGGFSVPRRA AEKVFPPLDY TQQPPAQELI ARDLHDNEWK FRHIFRGQPK  360
RHLLTTGWSV FVSAKRLVAG DSVLFIWNEK NQLLLGIRRA NRPQTVMPSS VLSSDSMHIG  420
LLAAAAHAAA TNSRFTIFYN PRASPSEFVI SLAKYVKAVY HTRVSVGMRF RMLFETEESS  480
VRRYMGTITG ISDLDSVRWP NSHWRSVKVG WDESTAGERQ PRVSLWEIEP LTTFPMYPSP  540
FPLRLKRPWP SGIPSFHALK DGDMGINSPL MWLQGGVGDP GMQSLNFQGF GVSPWMQPRL  600
DASMAGLQPD VYQAMAAAAL QEMRAVDAKC SSQSLLPFQQ SSNVSNAALL QRQSLPQSQS  660
QNTFLQSFQE HQIPASQLLQ QQLRYHPYNN DQRQLQQQQQ QQLQQSQNMH QFSVQQQIPN  720
VMSSLSNFAT QSQSASLQAI PSQTQQQSYS DPVGNAISSS DVPPIHSILG SLSQDGASQL  780
LNLSGSNSVI SSTLLPKVEP QLPSGAAHCV LPQVDQLGTQ QSNISDLTAL PPFPGREYSF  840
HGATDPQSNL LFGVNIDASS LMLQNGIHNL RNIGSGTDSL SIPFGTSNYT SGTGNDYPLN  900
SDMTTSSCVD ESGFLQSSEN VDQVNPPTRT FVKVHKSGSF GRSLDISKFS SYDELRSELG  960
SMFGLEGQLE DPQRSGWQLV FVDRENDVLL LGDDPWQEFV NNVWYIKILS PHEVQQMGKE  1020
GHNRVASVPS QKISNGSNTC DDYVSRQDLR NSSNGIASLG SLDY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30330.1	0.0	ARF family protein