PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro06_G21225

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

bHLH

Protein Properties

Length: 576aa MW: 62848.8 Da PI: 4.8576

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro06_G21225	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	32.1	2e-10	90	132	8	55
HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ErrRR r+++++ Lr+l+P+ +K++Ka+i+ Av Y+++Lq Ro06_G21225 90 SERRRRGRMKEKLYALRSLVPNI-----TKMDKASIVGDAVLYVQDLQ 132 6*******************7.....7****************9 PP
2	HLH	31.2	4e-10	392	435	7	55
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ErrRR +++++ +Lr+l+P+ +K++Ka+i+ Av Y+++Lq Ro06_G21225 392 VSERRRRGSMKEKLYTLRSLVPNI-----TKMDKASIVGDAVLYVQDLQ 435 57*******************7.....7****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 576 aa Download sequence
MDGMGSSGIH HLGGQGIIND FELQDFIADA NFDQFIDLIR GENEDPAAAY FDCDLISGSC 60 FVDNQFGPTT DPGATMTKKP KVDRSRTLVS ERRRRGRMKE KLYALRSLVP NITKMDKASI 120 VGDAVLYVQD LQKHAKKLEA EISSLEASIE GSGGNQGSTN NPTKNKLVAD NYHSTPKGII 180 QIDVSQVEEK GFYVKVGCNK GVGVATALYK AIESLTSFNV LSSNLNTVNS GRFEITLALN 240 VKECEQEIIN LPNLKLWVTG AFLNQGFQLT TLQDFIDDTN FDQFIDLIRG ENEDPAAAHF 300 DCDLISGSCF VDNQFGPTTD PGGLCGFDHN TIVVSAPAPF LTILPNVDGE INHIGDEDMD 360 EEDSCGTATT TTTNTTATTT KKPKVDRSKT LVSERRRRGS MKEKLYTLRS LVPNITKMDK 420 ASIVGDAVLY VQDLQKQATK LKADISGLEA SLEGSEGNQG STQNPTKNKL VAYNYHLIPK 480 GIIQIAVSQV EEKGFYVKVG CNKGVGVATA LYKAIESLTS FNVQSSNLNT VNSERFEITL 540 ALNVKECEQE IINLPNLKLW VTGAFLNQGF ELATGF

Sequence ? help Back to Top

Protein Sequence Length: 576 aa Download sequence

MDGMGSSGIH HLGGQGIIND FELQDFIADA NFDQFIDLIR GENEDPAAAY FDCDLISGSC  60
FVDNQFGPTT DPGATMTKKP KVDRSRTLVS ERRRRGRMKE KLYALRSLVP NITKMDKASI  120
VGDAVLYVQD LQKHAKKLEA EISSLEASIE GSGGNQGSTN NPTKNKLVAD NYHSTPKGII  180
QIDVSQVEEK GFYVKVGCNK GVGVATALYK AIESLTSFNV LSSNLNTVNS GRFEITLALN  240
VKECEQEIIN LPNLKLWVTG AFLNQGFQLT TLQDFIDDTN FDQFIDLIRG ENEDPAAAHF  300
DCDLISGSCF VDNQFGPTTD PGGLCGFDHN TIVVSAPAPF LTILPNVDGE INHIGDEDMD  360
EEDSCGTATT TTTNTTATTT KKPKVDRSKT LVSERRRRGS MKEKLYTLRS LVPNITKMDK  420
ASIVGDAVLY VQDLQKQATK LKADISGLEA SLEGSEGNQG STQNPTKNKL VAYNYHLIPK  480
GIIQIAVSQV EEKGFYVKVG CNKGVGVATA LYKAIESLTS FNVQSSNLNT VNSERFEITL  540
ALNVKECEQE IINLPNLKLW VTGAFLNQGF ELATGF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28160.1	1e-80	bHLH family protein