PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro06_G21888

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

MYB_related

Protein Properties

Length: 960aa MW: 106331 Da PI: 7.3035

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro06_G21888	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	25.4	3.4e-08	496	544	3	48
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 +WT E +lv++v + G+g+W+ I r Rt ++k++w+++l Ro06_G21888 496 AWTLVEVMKLVEGVSKCGTGRWSEIKRLSFasySYRTSVDLKDKWRNLL 544 7*************************9999999************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 960 aa Download sequence
METVFVVEGN EEGKCEESGV EKSSSSLSSP KQIADPVVYK LVRVEGDGRL VPATDDEIME 60 VEDFLVDEQI ELPVVTNTGN VECISNESSS GKPQKESSEG LLPSEVTEAD AKLSSHLEEI 120 VPSSALSLDG SINESGRKGE GSKHPDGPIE SGSSASVICT SSKLDFYTSN EEICLDNLSI 180 RELHELFRAM FGRETTVKDK LWLKRRIAMG LTNSCDVSTT TFTIINNKLV KDKDDSLQNA 240 NGMHAEGSDG GPKNLVYEDS PASHSSQLEN HQVVSAKRSG NLSEEEYGSE DLITEQRAAK 300 RVRKPTRRYI EELSEVESRD HSQKVISSAK IAGHEETSLT SCARPLRNVS SNEKTSNERT 360 IVTRLDSLGG SGVQVPYVSR VRRSRPRKNI MALMKFDPSG MGVTAKLVKE TLAVRTSLPE 420 SEWAENVLKA RSTSEQNEPL FATEPEKDKR RSVMGTIEHG KNLVLKQTDS SEDNSDDSIV 480 AVPTVKGGMR RKHHRAWTLV EVMKLVEGVS KCGTGRWSEI KRLSFASYSY RTSVDLKDKW 540 RNLLKASFAQ TPPDDGSRKH AAVPIPAPIL LKVRELAEMH AQVSAPEIVW NRSHENQATM 600 GIIERIKEIE AEMARTQKNK ATEYHLGQLK AKIAKLRTQL LEPPKGSSGG GEGFEVTKFG 660 HGRVALIGFP SVGKSTLLTM LTGTHSEAAS YEFTTLTCIP GIIHYNDTKI QLLDLPGIIE 720 GASEGKGRGR QVIAVAKSSD IVLMSEGHRQ ILTKELEAVG LRLNKRPPQI YFKKKKTGGI 780 SFNSTLTLTH VDEKLCYQIL HEYKIHNAEL LFREDATVDD LIDVIEGNRK YMKCLNFDRL 840 LAKMWEEMGL VRVYTKPQGQ QPDFGDPVVL SADRGGCTVA DFCNHIHRSL LKEVKYVLVW 900 GTSARHYPQH CGVTHLLNDE DVVQIVKKKE KEGEGRGRFK SHSTAPARIA DREKKAPLKQ

Sequence ? help Back to Top

Protein Sequence Length: 960 aa Download sequence

METVFVVEGN EEGKCEESGV EKSSSSLSSP KQIADPVVYK LVRVEGDGRL VPATDDEIME  60
VEDFLVDEQI ELPVVTNTGN VECISNESSS GKPQKESSEG LLPSEVTEAD AKLSSHLEEI  120
VPSSALSLDG SINESGRKGE GSKHPDGPIE SGSSASVICT SSKLDFYTSN EEICLDNLSI  180
RELHELFRAM FGRETTVKDK LWLKRRIAMG LTNSCDVSTT TFTIINNKLV KDKDDSLQNA  240
NGMHAEGSDG GPKNLVYEDS PASHSSQLEN HQVVSAKRSG NLSEEEYGSE DLITEQRAAK  300
RVRKPTRRYI EELSEVESRD HSQKVISSAK IAGHEETSLT SCARPLRNVS SNEKTSNERT  360
IVTRLDSLGG SGVQVPYVSR VRRSRPRKNI MALMKFDPSG MGVTAKLVKE TLAVRTSLPE  420
SEWAENVLKA RSTSEQNEPL FATEPEKDKR RSVMGTIEHG KNLVLKQTDS SEDNSDDSIV  480
AVPTVKGGMR RKHHRAWTLV EVMKLVEGVS KCGTGRWSEI KRLSFASYSY RTSVDLKDKW  540
RNLLKASFAQ TPPDDGSRKH AAVPIPAPIL LKVRELAEMH AQVSAPEIVW NRSHENQATM  600
GIIERIKEIE AEMARTQKNK ATEYHLGQLK AKIAKLRTQL LEPPKGSSGG GEGFEVTKFG  660
HGRVALIGFP SVGKSTLLTM LTGTHSEAAS YEFTTLTCIP GIIHYNDTKI QLLDLPGIIE  720
GASEGKGRGR QVIAVAKSSD IVLMSEGHRQ ILTKELEAVG LRLNKRPPQI YFKKKKTGGI  780
SFNSTLTLTH VDEKLCYQIL HEYKIHNAEL LFREDATVDD LIDVIEGNRK YMKCLNFDRL  840
LAKMWEEMGL VRVYTKPQGQ QPDFGDPVVL SADRGGCTVA DFCNHIHRSL LKEVKYVLVW  900
GTSARHYPQH CGVTHLLNDE DVVQIVKKKE KEGEGRGRFK SHSTAPARIA DREKKAPLKQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	382	388	RRSRPRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72650.1	1e-101	MYB_related family protein