PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro06_G22217
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family bHLH
Protein Properties Length: 310aa    MW: 33977.5 Da    PI: 9.3356
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro06_G22217genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH18.73.2e-061682071054
                  HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                  r+RR+ + +++  L++llP++      K++ a++Le A  Y++ L
  Ro06_G22217 168 RKRRQTLSDKMRCLQKLLPWD-----HKMDTATMLEAAHGYVRFL 207
                  9*******************8.....6**************9988 PP
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    
MEKTDKQSFM SLLVRDQESS SSNTKSPAFN SMFSGAVNLQ SILAATNPHP TQPSLPLSLF  60
ADNYCNLTTT PNVTPKSEQL YHQYGAVSAQ SLNDYSSIFN HLPDLLSLDH PHSSASYKRA  120
RLLDSHPSYS HHNHHPQTLA SYQLYPTPPT SPAAPPQPVV PRGSSLARKR RQTLSDKMRC  180
LQKLLPWDHK MDTATMLEAA HGYVRFLRAQ LTALQTMPIV ASDCGSLPVL TRGGGDGDVD  240
VLSRLSRTQL LQVLVNSPVA QMRMCSLGRC VFSVEQLALL NKRSVIRSAM VSGHYSPSFI  300
DSSASASTTN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22100.18e-26bHLH family protein