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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | Ro06_G22220 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
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| Family | GRAS | ||||||||
| Protein Properties | Length: 442aa MW: 48647.3 Da PI: 4.8687 | ||||||||
| Description | GRAS family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | GRAS | 298.9 | 1.2e-91 | 49 | 431 | 2 | 373 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn.sseelaalkl...fsevsPilkfsh 95
++lLl+cA a++s+d +laq++++ l++ as+ gdp+qRl++ +++AL +r +r ++++ + ps+t+++ +++l++++ ++++ P+++f++
Ro06_G22220 49 EKLLLHCASALESNDVTLAQQVMWVLNNVASSVGDPNQRLTSWILRALISRSSRICPNINGSGGPSPTTSSFaAARRLMSVTElagYVDLIPWHRFGY 146
689*********************************************************99977777755445555555444599************ PP
GRAS 96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg...skeeleetgerLakfAeelgvpfefnvl.....vak 184
+ N+aI +a++g+++vHi+Df+i++++QWp+L++aLa+Rpegpp slR+T+ + + + ++ee+g rL +f + +vpfef+v+ +
Ro06_G22220 147 CASNSAIFKAIQGCSKVHILDFSITHCMQWPTLIDALAKRPEGPPdSLRVTVPSCRPLVpplLNVSIEEVGLRLGNFSRFRDVPFEFSVIensssFEL 244
*****************************************99998*****98875555889999************************954332223 PP
GRAS 185 rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseer 282
l++l++ L+++ +Eal++n++ l +l d+++s++s+r+++L+++ l+P+++vvv++++d++s+s+ r++ +++y + fdsle+ lp++s +r
Ro06_G22220 245 LLSQLNPTCLNLEDDEALVINCQNWLRYLSDDEGSTSSARNTFLNMITCLNPRIIVVVDEDSDLSSPSLSSRITTCFNYLWIPFDSLETFLPKDSTQR 342
4556699999**************************************************************************************** PP
GRAS 283 ikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
+ +E +g +i+n++ eg +r+er e+ + ++r+++aGF + p+ e+++ ++k+ll +++ g+ ++ e++ lvl+Wk+++ v+++aW
Ro06_G22220 343 KEYESD-IGHKIENIIGFEGVQRIERLESGVTASQRMRNAGFLNSPFCEETVGEVKALLDEHA-SGWGMKREEDMLVLTWKGHNSVFATAW 431
******.********************************************************.889999999****************** PP
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| Sequence ? help Back to Top |
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| Protein Sequence Length: 442 aa Download sequence |
MKTEVRVGSS TPIAALQNPS LLINSTTSQG SLTGALRGCL GSLDGACIEK LLLHCASALE 60 SNDVTLAQQV MWVLNNVASS VGDPNQRLTS WILRALISRS SRICPNINGS GGPSPTTSSF 120 AAARRLMSVT ELAGYVDLIP WHRFGYCASN SAIFKAIQGC SKVHILDFSI THCMQWPTLI 180 DALAKRPEGP PDSLRVTVPS CRPLVPPLLN VSIEEVGLRL GNFSRFRDVP FEFSVIENSS 240 SFELLLSQLN PTCLNLEDDE ALVINCQNWL RYLSDDEGST SSARNTFLNM ITCLNPRIIV 300 VVDEDSDLSS PSLSSRITTC FNYLWIPFDS LETFLPKDST QRKEYESDIG HKIENIIGFE 360 GVQRIERLES GVTASQRMRN AGFLNSPFCE ETVGEVKALL DEHASGWGMK REEDMLVLTW 420 KGHNSVFATA WVPNQNGLIL ED |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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| Hit ID | E-value | Description | ||||
| AT3G49950.1 | 1e-120 | GRAS family protein | ||||




