PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro06_G22220
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family GRAS
Protein Properties Length: 442aa    MW: 48647.3 Da    PI: 4.8687
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro06_G22220genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS298.91.2e-91494312373
         GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn.sseelaalkl...fsevsPilkfsh 95 
                  ++lLl+cA a++s+d +laq++++ l++ as+ gdp+qRl++ +++AL +r +r ++++  +  ps+t+++   +++l++++    ++++ P+++f++
  Ro06_G22220  49 EKLLLHCASALESNDVTLAQQVMWVLNNVASSVGDPNQRLTSWILRALISRSSRICPNINGSGGPSPTTSSFaAARRLMSVTElagYVDLIPWHRFGY 146
                  689*********************************************************99977777755445555555444599************ PP

         GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg...skeeleetgerLakfAeelgvpfefnvl.....vak 184
                   + N+aI +a++g+++vHi+Df+i++++QWp+L++aLa+Rpegpp slR+T+ +    +    + ++ee+g rL +f +  +vpfef+v+      + 
  Ro06_G22220 147 CASNSAIFKAIQGCSKVHILDFSITHCMQWPTLIDALAKRPEGPPdSLRVTVPSCRPLVpplLNVSIEEVGLRLGNFSRFRDVPFEFSVIensssFEL 244
                  *****************************************99998*****98875555889999************************954332223 PP

         GRAS 185 rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseer 282
                   l++l++  L+++ +Eal++n++  l +l d+++s++s+r+++L+++  l+P+++vvv++++d++s+s+  r++ +++y +  fdsle+ lp++s +r
  Ro06_G22220 245 LLSQLNPTCLNLEDDEALVINCQNWLRYLSDDEGSTSSARNTFLNMITCLNPRIIVVVDEDSDLSSPSLSSRITTCFNYLWIPFDSLETFLPKDSTQR 342
                  4556699999**************************************************************************************** PP

         GRAS 283 ikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                  + +E   +g +i+n++  eg +r+er e+  + ++r+++aGF + p+ e+++ ++k+ll +++  g+ ++ e++ lvl+Wk+++ v+++aW
  Ro06_G22220 343 KEYESD-IGHKIENIIGFEGVQRIERLESGVTASQRMRNAGFLNSPFCEETVGEVKALLDEHA-SGWGMKREEDMLVLTWKGHNSVFATAW 431
                  ******.********************************************************.889999999****************** PP

Sequence ? help Back to Top
Protein Sequence    Length: 442 aa     Download sequence    
MKTEVRVGSS TPIAALQNPS LLINSTTSQG SLTGALRGCL GSLDGACIEK LLLHCASALE  60
SNDVTLAQQV MWVLNNVASS VGDPNQRLTS WILRALISRS SRICPNINGS GGPSPTTSSF  120
AAARRLMSVT ELAGYVDLIP WHRFGYCASN SAIFKAIQGC SKVHILDFSI THCMQWPTLI  180
DALAKRPEGP PDSLRVTVPS CRPLVPPLLN VSIEEVGLRL GNFSRFRDVP FEFSVIENSS  240
SFELLLSQLN PTCLNLEDDE ALVINCQNWL RYLSDDEGST SSARNTFLNM ITCLNPRIIV  300
VVDEDSDLSS PSLSSRITTC FNYLWIPFDS LETFLPKDST QRKEYESDIG HKIENIIGFE  360
GVQRIERLES GVTASQRMRN AGFLNSPFCE ETVGEVKALL DEHASGWGMK REEDMLVLTW  420
KGHNSVFATA WVPNQNGLIL ED
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.11e-120GRAS family protein