PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro06_G22225
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family ERF
Protein Properties Length: 229aa    MW: 24816.7 Da    PI: 8.9772
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro06_G22225genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.67.4e-1997147155
          AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                  + y+GVr++  +g+WvAeIr p   + r  r +lg+f ta eAa a+++a+++++g
  Ro06_G22225  97 CNYRGVRQRT-WGKWVAEIRSP---N-RgSRLWLGTFPTAIEAALAYDEAARAMYG 147
                  56*****999.**********8...3.35************************987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    
MNSVGSLAIG FCLDGLSLGI SLYSVLNTNF DCMTRLKKVH TKQDGSNPVA ETLAKWKEYN  60
DHLESCNDGS KPTRRVPAKG SKKGCMKGKG GPENSRCNYR GVRQRTWGKW VAEIRSPNRG  120
SRLWLGTFPT AIEAALAYDE AARAMYGSSA RLNFPKISIS SLSTNPSARA TLSVPSSVAT  180
SAGSESSGTS DHSEDFSARD KVNSHSPHLV NTDVIDLNQM DLNQTNELE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05410.23e-37ERF family protein