PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro06_G22312
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family B3
Protein Properties Length: 248aa    MW: 28085.4 Da    PI: 7.7365
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro06_G22312genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3451.9e-141091290
                 EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
           B3  2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90
                 fk+l  +  + s++l++p+ f+++++g    +++  l+ + g+ W v+l  +   +r v+ +GW++F k + L++gDf++F++dg s f
  Ro06_G22312 10 FKAL--AGDF-SQQLRIPRAFVKNFNGCV--PRMCGLRGPCGKYWAVEL--EEIENRLVFHNGWQHFLKHHFLEVGDFLTFTYDGVSIF 91
                 5555..4444.456********8885553..45799*************..********************************997766 PP
2B334.34.1e-111642281683
                  EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEE CS
           B3  16 lvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFk 83 
                  +++p++ + + g+   +++t+tl+d+ grs +vkl+ + ++g+ ++l+ GW++ +k+n++  gD++v++
  Ro06_G22312 164 MRVPRSVVIAAGLM--SNVTITLQDPAGRSQSVKLT-EVSRGQlCMLE-GWSKCCKENQISFGDTLVIE 228
                  67888888777766..789****************4.55666645565.******************99 PP
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    
MELEERPSFF KALAGDFSQQ LRIPRAFVKN FNGCVPRMCG LRGPCGKYWA VELEEIENRL  60
VFHNGWQHFL KHHFLEVGDF LTFTYDGVSI FDVIIYGKSY CEKNVDAAKS RIGSVVYRSS  120
SNHVISGKRP ALDLEEETSI GSIPFKSENP FFTTTFTKCI QYDMRVPRSV VIAAGLMSNV  180
TITLQDPAGR SQSVKLTEVS RGQLCMLEGW SKCCKENQIS FGDTLVIEGF TLLFIMLMRL  240
ENRLAHLG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53310.17e-16B3 family protein