PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro06_G22338
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family ZF-HD
Protein Properties Length: 366aa    MW: 40024.8 Da    PI: 6.8403
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro06_G22338genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer109.81.5e-3467124359
  ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrevee 59 
                   v+Yk+ClkNhAaslGgha+DGCgEfmps++++ +++++lkCaACgCHRnFHRre+e+
  Ro06_G22338  67 VVTYKDCLKNHAASLGGHALDGCGEFMPSPTATpTDPTSLKCAACGCHRNFHRREPED 124
                  589******************************9*********************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    
MDIAPSITTT TTNTTTSTKS PEADSETPTR IQPAKPLSFS NGVLKRHNSA HHHSHHHHNG  60
IPVTPVVVTY KDCLKNHAAS LGGHALDGCG EFMPSPTATP TDPTSLKCAA CGCHRNFHRR  120
EPEDNIPAVT PATHVIEYQP HHRHHPPPPI IGSRSPNSAS PPPISSSYYP SAPHMLLALS  180
TGLSGQENPN SQHGAMVSPS PNARKRFRTK FSQDQKDKMY QFAERVGWKM QKRDEEIVHD  240
FCNEIGVDKG VLKVWMHNNK NTFGKRDPAP GVRLGNNLDQ IHNNMNGNNN GGNHDDDEQD  300
DHPNNDNNGG GNNILNPNHH HYQGGGGGGG DHPHSATNGL EENDPIRDLR QEADQDQMVD  360
DESGIK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28920.19e-75ZF-HD family protein