PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro06_G22339
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family ZF-HD
Protein Properties Length: 86aa    MW: 9459.55 Da    PI: 7.7373
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro06_G22339genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer98.35.8e-312074359
  ZF-HD_dimer  3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59
                 +vrY eC+kNhAa +Gg+avDGC+Efm+s geeg +aal+CaACgCHRnFHRreve+
  Ro06_G22339 20 NVRYGECQKNHAAGVGGYAVDGCREFMAS-GEEG-TAALTCAACGCHRNFHRREVET 74
                 79**************************9.6664.689****************875 PP
Sequence ? help Back to Top
Protein Sequence    Length: 86 aa     Download sequence    
MRKRQVVVRR EEPSSYTIRN VRYGECQKNH AAGVGGYAVD GCREFMASGE EGTAALTCAA  60
CGCHRNFHRR EVETVCECSS PTSTEA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28917.15e-28ZF-HD family protein