PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro06_G22340

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

MYB

Protein Properties

Length: 348aa MW: 38293.7 Da PI: 6.5189

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro06_G22340	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55	1.9e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd +lv +++++G+g+W++++ g+ R+ k+c++rw +yl Ro06_G22340 14 KGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNYL 61 79****************************99**********97 PP
2	Myb_DNA-binding	48.3	2.4e-15	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T E++ ++++ ++lG++ W++Ia++++ Rt++++k++w+++l Ro06_G22340 67 RGNFTDHEEKMIIHLQALLGNR-WAAIASYLP-QRTDNDIKNYWNTHL 112 89******************.*****.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 348 aa Download sequence
MGRPPCCDKE GVKKGPWTPE EDIILVSYIQ EHGPGNWRAV PTNTGLLRCS KSCRLRWTNY 60 LRPGIKRGNF TDHEEKMIIH LQALLGNRWA AIASYLPQRT DNDIKNYWNT HLKKKLNKLN 120 QTGGHSKDEG FTSTCSQQAT IARGQWERRL QTDIHMARQA LRDALSPAEN YKPDAVASTM 180 SLSSPSTSTS TDLKPTMDNA PAAKLDQTPA TLSTTYASST ENISRLLKGW MKNPPKSAKT 240 FTTAAAGVID STSSTEEATL SATNTTATTS TTGQGNVELS NAFESLFGFE NSLESSNSDL 300 SPTMSPDQGS LFQAESKPDV NQDQLPLSLL EKWLFDEAAI IQGKEFEE

Sequence ? help Back to Top

Protein Sequence Length: 348 aa Download sequence

MGRPPCCDKE GVKKGPWTPE EDIILVSYIQ EHGPGNWRAV PTNTGLLRCS KSCRLRWTNY  60
LRPGIKRGNF TDHEEKMIIH LQALLGNRWA AIASYLPQRT DNDIKNYWNT HLKKKLNKLN  120
QTGGHSKDEG FTSTCSQQAT IARGQWERRL QTDIHMARQA LRDALSPAEN YKPDAVASTM  180
SLSSPSTSTS TDLKPTMDNA PAAKLDQTPA TLSTTYASST ENISRLLKGW MKNPPKSAKT  240
FTTAAAGVID STSSTEEATL SATNTTATTS TTGQGNVELS NAFESLFGFE NSLESSNSDL  300
SPTMSPDQGS LFQAESKPDV NQDQLPLSLL EKWLFDEAAI IQGKEFEE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G28910.1	1e-104	MYB family protein