PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro06_G23170

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

C2H2

Protein Properties

Length: 316aa MW: 34743.6 Da PI: 7.0906

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro06_G23170	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	10.8	0.0015	133	155	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+++Fs+ L H +H Ro06_G23170 133 YECKTCNRCFSSFQALGGHRASH 155 99**********99999998887 PP
2	zf-C2H2	12.5	0.00044	218	240	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cg F++ L H+r+H Ro06_G23170 218 HECSVCGAEFTSGQALGGHMRRH 240 78********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 316 aa Download sequence
MEAANHEEDQ TQMMIIKGKR TKRQRLSSPI VLTTTASSSS SPGGGDDVED HHHHQLGMIS 60 TPIRVGQDDD TTASPATSAE FTEMSTTEEE EDMANCLILL AQSGQTQIRK VEQQQQPIKA 120 VAAADTAPGL YVYECKTCNR CFSSFQALGG HRASHKKPKA NNVIDTTQAQ PKKALSFMED 180 HQDEFDHHHQ QFNNTTSTTL SLQISNRGFG NSKGNKVHEC SVCGAEFTSG QALGGHMRRH 240 RTFMNSTTTP ATTTTTSMSR HQSQGSNKRP RSVLQLDLNL PAPEEERLEM TKLPFASSKK 300 EQVIVFSASP LVGCHY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03510.1	7e-50	C2H2 family protein