PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro06_G23655
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family HB-other
Protein Properties Length: 169aa    MW: 19227.3 Da    PI: 9.3424
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro06_G23655genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox261.5e-0859100344
                  --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHH CS
     Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqV 44 
                  k+++++ eq+++Le+ Fe ++++  e++ +LA+ lgL+ rqV
  Ro06_G23655  59 KKRRLSFEQVKALEKNFEVENKLEPERKVRLAQDLGLQPRQV 100
                  45578889*********************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 169 aa     Download sequence    
MKRLGSSDSL GALISICPTT TADEHSPRNN HVYSRDFQSM LDDMDEEGCV EESGHIAEKK  60
RRLSFEQVKA LEKNFEVENK LEPERKVRLA QDLGLQPRQV VEKTTQRKKR GAMFSFIAEG  120
IVIIVGPSQG VKKVTKIVQD CIVHNVHPVC WVTTFKRVLP MKRLEALRL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22430.12e-36HD-ZIP family protein