PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro06_G23686

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

C2H2

Protein Properties

Length: 688aa MW: 77687.3 Da PI: 7.618

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro06_G23686	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.3	0.0011	661	684	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ++C C++sF++ L++H + H Ro06_G23686 661 FRCDPCNRSFNSDGALQSHTKAkH 684 89999**************99877 PP

Sequence ? help Back to Top
Protein Sequence Length: 688 aa Download sequence
MKDIQCLNPG SLLIETQKLK FHFTDLIIEE KRNRLTHFHI EEICELIKPL ERGHLDSIRI 60 LLDLSMSELQ SSSVKMSCEG KVHPVSSNGD MTKEKPFKIF VGYDPREDLA YEVCRHSILK 120 RSSIPVEIVP IKQSELRKNG LYWRERGQFE STEFSFTRFL TPHLANYEGW AMFVDCDFLY 180 LADIKELRDL IDDKYAIMCV QHDYTPKETT KMDGAVQTVY PRKNWSSMVL YNSRHPKNKV 240 LTPEVVNKET GAFLHRFQWL EDDEIGSIPF VWNFLEGHNK VVENDPQTFP KSIHYTRGGP 300 WFEAWKHCEF ADLWLKEMEE YQQEAKKKVE KWFELQSLLL SCAGCSLALS PVIGMGSACH 360 WQGPQRSCLV YPSSGRQGHW PFSIVVGEDD RCSGPSAKHI HFVSMDKKSK EPMPVRLQGG 420 LSFELWKTKN MSWPHGTGGS AFSETLPLRS ATAMANKMKF WGVEVKSGQS IVVDPGITFI 480 HLSQACLDEV KKAKGSDSIS LFVKTGDQKL VIGHLYAEKI PQIYFDLVFD KEFVLSHNGK 540 NGSVHFHGYI ANTGYPFPEP QVSIVEAKKD IKSDQKVSSS DDDESDDEEF DQVDGSNKHA 600 AESSKTPVQK KAKFVTPEKT GGKKGAVHIA TPYPSKQAGK KPANSDQTKQ QSSKSSGGGA 660 FRCDPCNRSF NSDGALQSHT KAKHGAAK

Sequence ? help Back to Top

Protein Sequence Length: 688 aa Download sequence

MKDIQCLNPG SLLIETQKLK FHFTDLIIEE KRNRLTHFHI EEICELIKPL ERGHLDSIRI  60
LLDLSMSELQ SSSVKMSCEG KVHPVSSNGD MTKEKPFKIF VGYDPREDLA YEVCRHSILK  120
RSSIPVEIVP IKQSELRKNG LYWRERGQFE STEFSFTRFL TPHLANYEGW AMFVDCDFLY  180
LADIKELRDL IDDKYAIMCV QHDYTPKETT KMDGAVQTVY PRKNWSSMVL YNSRHPKNKV  240
LTPEVVNKET GAFLHRFQWL EDDEIGSIPF VWNFLEGHNK VVENDPQTFP KSIHYTRGGP  300
WFEAWKHCEF ADLWLKEMEE YQQEAKKKVE KWFELQSLLL SCAGCSLALS PVIGMGSACH  360
WQGPQRSCLV YPSSGRQGHW PFSIVVGEDD RCSGPSAKHI HFVSMDKKSK EPMPVRLQGG  420
LSFELWKTKN MSWPHGTGGS AFSETLPLRS ATAMANKMKF WGVEVKSGQS IVVDPGITFI  480
HLSQACLDEV KKAKGSDSIS LFVKTGDQKL VIGHLYAEKI PQIYFDLVFD KEFVLSHNGK  540
NGSVHFHGYI ANTGYPFPEP QVSIVEAKKD IKSDQKVSSS DDDESDDEEF DQVDGSNKHA  600
AESSKTPVQK KAKFVTPEKT GGKKGAVHIA TPYPSKQAGK KPANSDQTKQ QSSKSSGGGA  660
FRCDPCNRSF NSDGALQSHT KAKHGAAK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G44750.2	1e-24	C2H2 family protein