PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro06_G23823
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family GATA
Protein Properties Length: 197aa    MW: 21433.9 Da    PI: 11.6206
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro06_G23823genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA61.79e-202254133
         GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkk 33
                 C+nC++tkTplWR+gp g+k+LCnaCG++ rk+
  Ro06_G23823 22 CVNCKATKTPLWRSGPAGPKSLCNACGIRLRKH 54
                 ********************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    
MNIMMELRSK GSVAQVITEK SCVNCKATKT PLWRSGPAGP KSLCNACGIR LRKHLAKSLN  60
EEDKPKGRKR KKSKIQSNRP TASASTNCST THIAAGTSTS TTAKSASASA AANGNASGRG  120
RGRDSVLAVR LVVKKPKVMK NQKVVKKLRR YQRRRTNFRR TGFYFFNKKL RKLGEEEQAA  180
VALLALSCGC GSSFSEV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16872RKRKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16141.12e-14GATA family protein