PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro06_G24436

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

SBP

Protein Properties

Length: 166aa MW: 19020.3 Da PI: 10.0784

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro06_G24436	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	132.4	1.5e-41	49	125	1	77
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 +Cq+++C+adls+ k+yhr+hkvCe+hskap vl+sg++qrfCqqCsrfhelsefD++krsCrrrLa+hnerrrk+ Ro06_G24436 49 CCQADKCTADLSDEKQYHRKHKVCEHHSKAPLVLLSGISQRFCQQCSRFHELSEFDDTKRSCRRRLAGHNERRRKNP 125 6**************************************************************************85 PP

Sequence ? help Back to Top
Protein Sequence Length: 166 aa Download sequence
MEESKSKQRH VVVKKAEEED LNNNNNKKKL GLLGGGSGSV RNQNQLMRCC QADKCTADLS 60 DEKQYHRKHK VCEHHSKAPL VLLSGISQRF CQQCSRFHEL SEFDDTKRSC RRRLAGHNER 120 RRKNPSESYA EGSGRKGTCG KVDDMGSGRI QINIRDNSTY KHFQTR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G53160.1	7e-47	SBP family protein