PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro06_G24980
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family WRKY
Protein Properties Length: 261aa    MW: 28526.7 Da    PI: 4.8232
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro06_G24980genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.22.2e-3075133259
                  --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                  +D +nWrKYGqK++kgs++pr+YYrC+s+  Cp++k+ver++ dp++++itY  +Hnh+
  Ro06_G24980  75 SDSWNWRKYGQKPIKGSPYPRGYYRCSSSkACPARKQVERNRLDPRMLIITYACDHNHP 133
                  69*************************9989***************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    
MKEYPKYDRN PVFSDSQDPE PISENDPESP SSGEEAKVTI APSPKKRRGV QKRVVSVPIG  60
DVEGPKGKGD GYPPSDSWNW RKYGQKPIKG SPYPRGYYRC SSSKACPARK QVERNRLDPR  120
MLIITYACDH NHPMPSTKGP HPAAIVTTSP AAEPELPAPS EELTAFASQA GLELSNNSAA  180
LLGDYGWLDD VASSTTVLES SICVGHSDYM NVDVATRLDD EDENLFADLG ELPEGSVFFP  240
HRMLISDEQN QRCSVSVVTT G
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58710.22e-73WRKY family protein