PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro06_G25095
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family ERF
Protein Properties Length: 197aa    MW: 22446.2 Da    PI: 5.8832
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro06_G25095genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.81.4e-18755254
          AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkle 54
                 +y+GVr+++ +g+Wv+eIr+p        +r++lg+f tae+Aa+a+++a++ + 
  Ro06_G25095  7 RYRGVRQRH-WGSWVSEIRHP-----LlkTRIWLGTFETAEDAARAYDEAARLMC 55
                 69******9.**********8.....334**********************8775 PP
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    
MARSQQRYRG VRQRHWGSWV SEIRHPLLKT RIWLGTFETA EDAARAYDEA ARLMCGPKAR  60
TNFPFNPNDH MSHSSNLLSS ALIAKLHKCN MASLQMTKKT APKEEPLQEV VLQQQYVQSV  120
TSSTSCIVEN SGFSGFNWSE KREYGGVQWG EGNWVGEAGV QVENHDFIQP LEEDHIEQMI  180
EELLDYGYIE LCPGVQS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25190.13e-55ERF family protein