PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro06_G27219

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

FAR1

Protein Properties

Length: 457aa MW: 51916.8 Da PI: 7.4989

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro06_G27219	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	34	9.4e-11	127	223	18	90
FAR1 18 kskkskrngeitkrtfvCskegkreeekkk.......................tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 +++ ++ +++i +r++ Cs + +++ + ++ +++ +r +tr +C a+++v + k +g ++v+++++eHnH+l+ Ro06_G27219 127 HKTDKNCDQKIRRRQWACSDKVSDSLNPERsrsfpqnqtmipgpggissnrkgKNQDPPSRRVTRYNCPARFTVLLCKtRGIYYVSEFVTEHNHDLV 223 4455567899********9999988887889**********9988777777779************999**************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 457 aa Download sequence
MPGNKKLLQG QCTSQIHASL TGSSIRMFVF NFMIETLRRI AVCVLLLKDC LIGIVLYTYI 60 DMLTLILMDE ILSSSSESEN EGGLSPLDVP DRHMDADADG LEDDGTDCLH YRGKKYEDLQ 120 LEDLNEHKTD KNCDQKIRRR QWACSDKVSD SLNPERSRSF PQNQTMIPGP GGISSNRKGK 180 NQDPPSRRVT RYNCPARFTV LLCKTRGIYY VSEFVTEHNH DLVRREHVRF LRSHRSIMDH 240 DIAKLTAMRK VSMSTCQAND LLVNQAGGYD YVGFTTQRCE LMHKNLKGGL GCTMRLYDVM 300 PRVDNAIRRF RDRTLEDDCK SINLDPVIGT FFSDEGYEAT IGELRRLNVG AKKNLVEPEH 360 ANKGLVNELH KNIVKDPVVC KTKETQFKAL NFEESSKSRG EAVYRFCHRS DHNIRTCELA 420 KESGNNIDTA PSQARTASLD PNEDPSGRLH QDITIQH

Sequence ? help Back to Top

Protein Sequence Length: 457 aa Download sequence

MPGNKKLLQG QCTSQIHASL TGSSIRMFVF NFMIETLRRI AVCVLLLKDC LIGIVLYTYI  60
DMLTLILMDE ILSSSSESEN EGGLSPLDVP DRHMDADADG LEDDGTDCLH YRGKKYEDLQ  120
LEDLNEHKTD KNCDQKIRRR QWACSDKVSD SLNPERSRSF PQNQTMIPGP GGISSNRKGK  180
NQDPPSRRVT RYNCPARFTV LLCKTRGIYY VSEFVTEHNH DLVRREHVRF LRSHRSIMDH  240
DIAKLTAMRK VSMSTCQAND LLVNQAGGYD YVGFTTQRCE LMHKNLKGGL GCTMRLYDVM  300
PRVDNAIRRF RDRTLEDDCK SINLDPVIGT FFSDEGYEAT IGELRRLNVG AKKNLVEPEH  360
ANKGLVNELH KNIVKDPVVC KTKETQFKAL NFEESSKSRG EAVYRFCHRS DHNIRTCELA  420
KESGNNIDTA PSQARTASLD PNEDPSGRLH QDITIQH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	6e-09	FAR1 family protein