PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro06_G27392
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family C2H2
Protein Properties Length: 290aa    MW: 32316 Da    PI: 8.0475
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro06_G27392genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.40.0002479101123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ++C++C + F ++  L  H++ H
  Ro06_G27392  79 FSCNYCQRKFYSSQALGGHQNAH 101
                  89*****************9988 PP
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    
METQNQSPQK EPVSEVINQR HPQQAPNPDL VLDLSLKSNK ESDQRLNPEL NLIDCFDSYI  60
CSETSTNDPK GTSHEPRVFS CNYCQRKFYS SQALGGHQNA HKRERTLAKK GVSHKIGAAS  120
DDFRLLSHRF SSMASLPLHG SINNRSLGIQ VHSTIHKPAS LYQSSLYGHN GSFLRHPIDQ  180
QPAIGRLAAA GSMSSSSSSS GGMGRFESTS RKISLAAERN GGFWWNSSVS HLKTKQDHEL  240
QKLDLYDELQ LLYNILWLQL ELYLKLRGDI PKINDQSSDS LDADVLNLGS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80730.17e-43C2H2 family protein