PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro06_G27495

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

FAR1

Protein Properties

Length: 449aa MW: 50874.2 Da PI: 5.8052

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro06_G27495	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	71.7	1.6e-22	133	215	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fYn YAk+ GF vr+s++ ++ +++e ++ ++ Cs g++++++ + r+r+etrtgC a++k +++++++w+++++eleHnH ++ Ro06_G27495 133 FYNCYAKQQGFGVRVSNTWYR-KSKERYRGKLSCSSAGFKKKSEAN-----RPRPETRTGCPAMVKFRLMDSNRWRIIEVELEHNHLIS 215 9*************99997.66779**********99888.....*********************************876 PP

Sequence ? help Back to Top
Protein Sequence Length: 449 aa Download sequence
MSHEAPDRGS ESAHRAEGDI SDILPEYLSF GRTSHSSCSG SSLCRFSGNS PATSPIRRII 60 LCTDFVDWDM MECMDEVSLN TEPAGDDDAD GYEIEGDCAM TEFVSQTGIM QGENPLPPAA 120 GMEFDSYEDV YYFYNCYAKQ QGFGVRVSNT WYRKSKERYR GKLSCSSAGF KKKSEANRPR 180 PETRTGCPAM VKFRLMDSNR WRIIEVELEH NHLISPASGK FYKSHKSIGG GTKRSLQLDS 240 AEEVQKIRLF RTVIIDSEGN GSIDVDEGQS SNKLQLSELY TNDILRKFGN EIAGMYSCFS 300 TRHLNVDGPV ITYTVKEQTE VDGHRREMRD YEVLYNPSEM EVLCICGMFN LKGYLCRHAL 360 SILNQNGVQE IPAQYVLSRW RKDIKRSYVY DHSCSGIDIN NPVHRYDHLY KCIVQVVEEG 420 RKSQDRYKVA LQALDGILSK LCITEDCAL

Sequence ? help Back to Top

Protein Sequence Length: 449 aa Download sequence

MSHEAPDRGS ESAHRAEGDI SDILPEYLSF GRTSHSSCSG SSLCRFSGNS PATSPIRRII  60
LCTDFVDWDM MECMDEVSLN TEPAGDDDAD GYEIEGDCAM TEFVSQTGIM QGENPLPPAA  120
GMEFDSYEDV YYFYNCYAKQ QGFGVRVSNT WYRKSKERYR GKLSCSSAGF KKKSEANRPR  180
PETRTGCPAM VKFRLMDSNR WRIIEVELEH NHLISPASGK FYKSHKSIGG GTKRSLQLDS  240
AEEVQKIRLF RTVIIDSEGN GSIDVDEGQS SNKLQLSELY TNDILRKFGN EIAGMYSCFS  300
TRHLNVDGPV ITYTVKEQTE VDGHRREMRD YEVLYNPSEM EVLCICGMFN LKGYLCRHAL  360
SILNQNGVQE IPAQYVLSRW RKDIKRSYVY DHSCSGIDIN NPVHRYDHLY KCIVQVVEEG  420
RKSQDRYKVA LQALDGILSK LCITEDCAL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52520.1	3e-52	FAR1 family protein