PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro06_G27545

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

G2-like

Protein Properties

Length: 246aa MW: 25804.7 Da PI: 6.3037

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro06_G27545	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	97.2	1.2e-30	115	168	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 +prl+Wtp+LH+rFv+av++L G+++A+Pkti++lm+v+gLt+e+v+SHLQkYRl Ro06_G27545 115 RPRLVWTPQLHKRFVDAVAHL-GIKNAVPKTIMQLMSVDGLTRENVASHLQKYRL 168 59*****************.******************************8 PP
2	Myb_DNA-binding	48.6	1.8e-15	117	167	1	48
TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg..tWktIartmg.kgRtlkqcksrwqkyl 48 r+ WT+++++++vdav+ lG + +ktI++ m g+t++++ s++qky+ Ro06_G27545 117 RLVWTPQLHKRFVDAVAHLGIKnaVPKTIMQLMSvDGLTRENVASHLQKYR 167 789*****************9*************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 246 aa Download sequence
MREDDSNWFS RWEEQLPSPE ELMPLSQTLI SPDLALAFDI RSNPNPNPNT NTNTNTTSSP 60 QHAPTPPPPP ANSLPPATPT HPNSSADFAD SADLGSGGGG GGGGPGDEPA RTLKRPRLVW 120 TPQLHKRFVD AVAHLGIKNA VPKTIMQLMS VDGLTRENVA SHLQKYRLYL KRMQGLSAGT 180 GGGGGGGGGS ADPATDHLFA SSPAVHRMGA PVHSPAVPGY IEDMESANAI AATARRVLTL 240 FPTGDD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10760.1	5e-58	G2-like family protein