PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro06_G28033

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

HD-ZIP

Protein Properties

Length: 265aa MW: 29534.5 Da PI: 4.7337

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro06_G28033	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	58.6	1e-18	28	74	10	56
HHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 10 eqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 + ++ Le+ Fe ++++ +++++LAkklgL+ rqV vWFqNrRa++k Ro06_G28033 28 DHVHLLEKSFETENKLEPDRKTQLAKKLGLQPRQVAVWFQNRRARWK 74 67889*****************************************9 PP
2	HD-ZIP_I/II	123.8	8.3e-40	27	111	8	92
HD-ZIP_I/II 8 keqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 ++ v+lLE+sFe+e+kLep+rK++la++LglqprqvavWFqnrRAR+ktkqlE+dy++Lk++yd+l ++ +++ ke+++L++e+ Ro06_G28033 27 SDHVHLLEKSFETENKLEPDRKTQLAKKLGLQPRQVAVWFQNRRARWKTKQLERDYDVLKSSYDSLLANYDSILKENQKLKSEVV 111 6889*****************************************************************************9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 265 aa Download sequence
MMEPGGLFFE PQQGGGGSGN MLFLGSSDHV HLLEKSFETE NKLEPDRKTQ LAKKLGLQPR 60 QVAVWFQNRR ARWKTKQLER DYDVLKSSYD SLLANYDSIL KENQKLKSEV VSITEKVEAK 120 DQHAKGAAFA ADHHGDEKCD PGHLFPGEKE MIMDANVPIS LQFSVKVEDR LSSGSGGSAV 180 VDEEGPQLVD SGNSYFPSSC DIHNYSPPPH DHHHHCMGIV DGVHSEEDDG SDDGRSYFSD 240 VFTVAEQQQQ SPEEEGVSMG WWVWS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	69	77	RRARWKTKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G01470.1	5e-67	HD-ZIP family protein