PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro06_G28163

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

LBD

Protein Properties

Length: 235aa MW: 26447 Da PI: 8.262

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro06_G28163	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	107.5	1e-33	14	104	1	91
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 aCaaCk++r+kC ++C+lapyfp e++++f++vhk+FG+snv+k++k+++e +r+++++slv+eA +r++dPv G +g ++ + +l+ k Ro06_G28163 14 ACAACKHQRKKCHEGCTLAPYFPVERNREFQAVHKVFGVSNVTKMVKNANEANRRKVVDSLVWEALCRQKDPVLGPYGEYRMIFDELKMYK 104 7****************************************************************************99888877777665 PP

Sequence ? help Back to Top
Protein Sequence Length: 235 aa Download sequence
MQRKSNGTPG TAPACAACKH QRKKCHEGCT LAPYFPVERN REFQAVHKVF GVSNVTKMVK 60 NANEANRRKV VDSLVWEALC RQKDPVLGPY GEYRMIFDEL KMYKNLENQT VPLQVQKGMC 120 YKSLTDLVAW NYETNGISNG MDGGNGITST NNLDYDIHVN ENIRINSVPY GYPLSCDQES 180 EAEKIKQVKL AADSIVAPVV HQQGNSINTI NQQYYISGQL NQIMGKPLER TIWEG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06280.1	1e-43	LBD family protein