PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro06_G28290
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family B3
Protein Properties Length: 534aa    MW: 61228.2 Da    PI: 9.2312
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro06_G28290genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B354.71.9e-1718108299
                  EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
           B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                  fk+   +d+++   +++pkkf+ ++g++   s   +l+ +sg +Wev+l  +++ g+++++kGW +F k   L+ gDf+vF+++g+s f   v +f++
  Ro06_G28290  18 FKII-LEDTSRDIKIRIPKKFVIKYGEDV--SNSARLQLPSGSEWEVEL--TRRNGKVWFEKGWPDFSKFCSLDYGDFLVFRYEGNSIF--QVCIFDR 108
                  4444.4677788889**********8774..457***************..999999****************************9999..9999998 PP
2B363.14.5e-20224315297
                  EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
           B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                  fkv +++++ k++ l lp kf++++ +k   s  +tl  ++ ++W+vk+  +  ++r +l+ GW eFvk+n+Lk+gD++vF+l+++ + ++ v +f
  Ro06_G28290 224 FKVVMQPSYIKQSYLLLPLKFFKRNLIKD--SGNVTLWVSNEKTWSVKF--NYEKSRATLKHGWLEFVKDNNLKVGDVCVFTLIKDIKLSFQVEFF 315
                  6899999999************9996553..3479999999********..66667789*************************987776777776 PP
3B339.11.3e-124445221897
                  --HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
           B3  18 lpkkfaeehggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                  +p +f++++   k+ +k+ ++ + + rsW v+li   +s+r    l +GW  F ++++Lk gD++vF++++ ++++lv+ +f
  Ro06_G28290 444 VPTSFIRSFI--KRLEKQTVMLQIKDRSWPVNLIPYTNSNRlsAKLCGGWAAFGREHNLKGGDVCVFEFME-MKANLVLEFF 522
                  7899998883..33555677888999*******88666666558888*********************987.8888887766 PP
Sequence ? help Back to Top
Protein Sequence    Length: 534 aa     Download sequence    
MGSFRPRKTF AATAPHFFKI ILEDTSRDIK IRIPKKFVIK YGEDVSNSAR LQLPSGSEWE  60
VELTRRNGKV WFEKGWPDFS KFCSLDYGDF LVFRYEGNSI FQVCIFDRSA TEIDYPMTMP  120
EMEETDHEDE EDDDLSIEIL EDSPPCPKTR EMSPLPCPPP YKKMRTSWSG KAADMMFENN  180
DGEGSSSTRR FLKGKLGGMH SLNKNEKAIC LQRAIDFKSE KPHFKVVMQP SYIKQSYLLL  240
PLKFFKRNLI KDSGNVTLWV SNEKTWSVKF NYEKSRATLK HGWLEFVKDN NLKVGDVCVF  300
TLIKDIKLSF QVEFFGTTGA ASFHTAPGHG RGAIEQVEDN RSSRIKVESD CIMNSGMASI  360
NPYPLDIGKN KRSNTSGKVT HRPCSSLRVN LEAANKFIPN NPFFKVSLGA SHMEKSNVVR  420
RVNNLYIYTI RSSTYFISFF MQNVPTSFIR SFIKRLEKQT VMLQIKDRSW PVNLIPYTNS  480
NRLSAKLCGG WAAFGREHNL KGGDVCVFEF MEMKANLVLE FFFPPSTVKS EEIE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.16e-37B3 family protein