PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro06_G28654
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family MIKC_MADS
Protein Properties Length: 246aa    MW: 28239.4 Da    PI: 10.6571
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro06_G28654genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF94.25.9e-30959151
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                 krienk+ rqvtfskRr+g+lKKA+E+SvLCdaeva+i+fs++gkl+eys+
  Ro06_G28654  9 KRIENKISRQVTFSKRRTGLLKKAHEISVLCDAEVALIVFSTKGKLFEYST 59
                 79***********************************************96 PP
2K-box100.23e-33721639100
        K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                  l ++  es++ e+ kL ++ie Lqr++R++ GedL++Lsl+eLq+Leqq++++lk++R++Kn+l++e+i+e+qkk k lqe+n++L+kkl+e
  Ro06_G28654  72 LMQKGRESWSMEYPKLAARIEILQRKIRNYTGEDLDPLSLRELQSLEQQIDTALKRVRTRKNQLMHESISEMQKKHKTLQEQNNSLTKKLKE 163
                  5677789**********************************************************************************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    
MGRGKVQLKR IENKISRQVT FSKRRTGLLK KAHEISVLCD AEVALIVFST KGKLFEYSTD  60
SRGSWSDMNN ILMQKGRESW SMEYPKLAAR IEILQRKIRN YTGEDLDPLS LRELQSLEQQ  120
IDTALKRVRT RKNQLMHESI SEMQKKHKTL QEQNNSLTKK LKENEKVRQA EPNNQQPNAS  180
TLMLMPPLRP PSQPSPPTLL SSLTIGGAVQ GRREAMDEDG EDHQGRAQTR PTTNTLMPPW  240
MVRHLN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69120.19e-67MIKC_MADS family protein