PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro06_G28895
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family C3H
Protein Properties Length: 155aa    MW: 17851.1 Da    PI: 7.8493
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro06_G28895genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH28.13.5e-095779527
                 --SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH  5 lCrffartGtCkyGdrCkFaHgp 27
                  C++f +tG+C+yGd Ck+ H++
  Ro06_G28895 57 VCNRFVKTGFCQYGDACKYFHPK 79
                 7********************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 155 aa     Download sequence    
MPLGKYDCEY CDKQFQDTPY ARKRHLQSLQ HLRAKAQWYD SFKDPYDAYA QSLGRGVCNR  60
FVKTGFCQYG DACKYFHPKN NQQNTITQGE KELYVFMISN RSWNAVIGLI DNNQSSTFQD  120
VVVRDNMGMS WGNLPPSLMP PPEGGYAPLP FVDWG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26749.18e-45C3H family protein