PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro07_G04301

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

bHLH

Protein Properties

Length: 603aa MW: 67642.3 Da PI: 5.0117

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro07_G04301	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	16.6	1.5e-05	419	452	17	55
HHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 17 NsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 N+++ Lr+++P+ + +Ka+iL +++Y+k+L+ Ro07_G04301 419 NEKLLVLRSMVPSM-----TEIDKASILDDTIKYLKELE 452 99999******8.....79*************996 PP

Sequence ? help Back to Top
Protein Sequence Length: 603 aa Download sequence
MANGTQIHER VPENLRKQFA VAVRSIKWSY AIFWSLSTTQ QGVLEWGEGY YNGDIKTRKT 60 VEGVELKADK IGLQRNEQLR ELYKSLLVGE STDQQSKVPS AALSPEDLTD AEWYYLLCMS 120 FTVVCFPYLG GVVELGVTEL VPEDPSLLQH IKASLLDFSK PDCSEKSSSA PHKSDEDSDQ 180 ILANFVDHEI VDTLALENLY SPSEELKFDQ RGINGLHGHD EEFSMGSADE CSKGCEHNHQ 240 TEDSFMLEAV NGGASQVQSW HFMDDDFSNG FQDSMNSSDC ISEAFVNQGK AHSSTRPGNK 300 NHNHLKELQN FNDTKFSSLD LGPADDHLHY KRTLSAILGS SMRIIENSYF CSGDCKSSFV 360 QWKKGVVYSC SPKAQQKLLK KILFTVPLMM SGGSPSPQKE TTTNSKLEND DVHENMRENE 420 KLLVLRSMVP SMTEIDKASI LDDTIKYLKE LEARAEEMES CMDTVEAIAR RKFLERVEKA 480 SDNYDKTKIG NAKKPWINKR KACDIDETDP ELNRLVPKES SPLDVKVSVK EQEVLIEMSC 540 PYREYILLDI MDAVNNLYLD THSVQSSTLN GVLSLSLKSK FRGAAVAPVG MIKQALWKIA 600 GKC

Sequence ? help Back to Top

Protein Sequence Length: 603 aa Download sequence

MANGTQIHER VPENLRKQFA VAVRSIKWSY AIFWSLSTTQ QGVLEWGEGY YNGDIKTRKT  60
VEGVELKADK IGLQRNEQLR ELYKSLLVGE STDQQSKVPS AALSPEDLTD AEWYYLLCMS  120
FTVVCFPYLG GVVELGVTEL VPEDPSLLQH IKASLLDFSK PDCSEKSSSA PHKSDEDSDQ  180
ILANFVDHEI VDTLALENLY SPSEELKFDQ RGINGLHGHD EEFSMGSADE CSKGCEHNHQ  240
TEDSFMLEAV NGGASQVQSW HFMDDDFSNG FQDSMNSSDC ISEAFVNQGK AHSSTRPGNK  300
NHNHLKELQN FNDTKFSSLD LGPADDHLHY KRTLSAILGS SMRIIENSYF CSGDCKSSFV  360
QWKKGVVYSC SPKAQQKLLK KILFTVPLMM SGGSPSPQKE TTTNSKLEND DVHENMRENE  420
KLLVLRSMVP SMTEIDKASI LDDTIKYLKE LEARAEEMES CMDTVEAIAR RKFLERVEKA  480
SDNYDKTKIG NAKKPWINKR KACDIDETDP ELNRLVPKES SPLDVKVSVK EQEVLIEMSC  540
PYREYILLDI MDAVNNLYLD THSVQSSTLN GVLSLSLKSK FRGAAVAPVG MIKQALWKIA  600
GKC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G41315.1	1e-123	bHLH family protein